Protein Info for PS417_25165 in Pseudomonas simiae WCS417

Annotation: chitin-binding protein

These analyses and tools can help you predict a protein's function, but be skeptical. For enzymes, over 10% of annotations from KEGG or SEED are probably incorrect. For other types of proteins, the error rates may be much higher. MetaCyc and Swiss-Prot have low error rates, but the best hits in these databases are often quite distant, so this protein's function may not be the same. TIGRFam has low error rates. Finally, many experimentally-characterized proteins are not in any of these databases. To find relevant papers, use PaperBLAST.

Protein Families and Features

1 50 100 150 211 transmembrane" amino acids 188 to 206 (19 residues), see Phobius details PF03067: LPMO_10" amino acids 12 to 208 (197 residues), 89.9 bits, see alignment E=1.7e-29

Best Hits

KEGG orthology group: K03933, chitin-binding protein (inferred from 68% identity to pfo:Pfl01_3569)

Predicted SEED Role

"Chitin binding protein" in subsystem Chitin and N-acetylglucosamine utilization

Sequence Analysis Tools

PaperBLAST (search for papers about homologs of this protein)

Search CDD (the Conserved Domains Database, which includes COG and superfam)

Compare to protein structures

Predict protein localization: PSORTb (Gram-negative bacteria)

Predict transmembrane helices and signal peptides: Phobius

Check the current SEED with FIGfam search

Find homologs in fast.genomics or the ENIGMA genome browser

See A0A1N7U7A6 at UniProt or InterPro

Protein Sequence (211 amino acids)

>PS417_25165 chitin-binding protein (Pseudomonas simiae WCS417)
MNKPESKSRMKHGRVIFPAARSAIAINEGLISEWHADEMEGGKNFPSEKAGEFPPPFESD
IASDVPPADDYILSGGETDARECVNFTNQEMSQKLGRQFTWPLLDVNAGQTFLVKWEYAE
PHMTRGYSWFITKDGWDPEKRINRAQLESEPFYKDFYTQVPYWDHSATLKAKTEHEVKLP
SGKQGHHVIVLLWIIANTGNAFYQAFDVKFK