Protein Info for GFF4906 in Sphingobium sp. HT1-2

Annotation: hypothetical protein

These analyses and tools can help you predict a protein's function, but be skeptical. For enzymes, over 10% of annotations from KEGG or SEED are probably incorrect. For other types of proteins, the error rates may be much higher. MetaCyc and Swiss-Prot have low error rates, but the best hits in these databases are often quite distant, so this protein's function may not be the same. TIGRFam has low error rates. Finally, many experimentally-characterized proteins are not in any of these databases. To find relevant papers, use PaperBLAST.

Protein Families and Features

1 50 100 150 200 250 300 350 400 450 500 550 600 650 700 750 809 signal peptide" amino acids 1 to 26 (26 residues), see Phobius details PF07715: Plug" amino acids 55 to 161 (107 residues), 39 bits, see alignment E=9.8e-14 PF00593: TonB_dep_Rec_b-barrel" amino acids 300 to 748 (449 residues), 109 bits, see alignment E=5.7e-35

Best Hits

Predicted SEED Role

No annotation

Sequence Analysis Tools

PaperBLAST (search for papers about homologs of this protein)

Search CDD (the Conserved Domains Database, which includes COG and superfam)

Compare to protein structures

Predict protein localization: PSORTb (Gram-negative bacteria)

Predict transmembrane helices and signal peptides: Phobius

Check the current SEED with FIGfam search

Find homologs in fast.genomics or the ENIGMA genome browser

Find the best match in UniProt

Protein Sequence (809 amino acids)

>GFF4906 hypothetical protein (Sphingobium sp. HT1-2)
MNRMSAYYLIGASVAALTIATPALAQAPEEQAATSNTGFDAQIIIVEARRRGEDIQDVPA
VVNAVTEQAIGNLNIRTFNEVQALAPGLELTNNANGIGGNARLRGVNFDANASGNSGTIQ
FYFNDAPLSPGAVLQQMYDIGQIEVQRGPQGTLRGRASPSGSITITTRKPDLNQFGGFID
WTGNDIGTLNFKGGLNLPIIEGIAGIRVSGVWNEDDADRVRPISGGPSPWSRTKSTRIVG
TIEPTDWLKLEGTYQYMDRDARTYDQAISFSEANPDATPSPVLITAKDRLSIQEQPRIIN
QRFDIFNWRSELAFAGQRLIYQGMYTKQKFHSTDNVDDGNFFIGRDVNQVTDTVAKETSH
EIRLQNEERVFDMFDYVIGFFDDRLNPPTHLTSPTIVRLPAAFGGGIASVVQTEIDRTGK
SHEQSFFGNLTAHFGEATELSGGLRQIKYKSNNYLAVNGNTIAADSQDTDKLIYSASIKH
NFTPDFLVYAATGSSFRPGINVVGDFNIAPSALERSFLDLPPETSKSYELGFKSTLMGGR
MRFNVTAYHQKYKNFPYRVPNNGVYYVNTVAVRNAAGQVTGTAQQVGSFNFVGAVPVEVN
GVESELGFDITRSWNVNLTGSYSLGKIKNGTIPCNDLNGDGIPDPVGNAPSLAELQAAVG
ADNLSACAVNQRAAFLPPITATLQSEFHTSISGKTDGFIRGLVNYNGKSKGDPGNNYDDV
SAYALVNLYAGIRDPDGGWEISLFAKNLFDTTKVLTRTTPLFTGYQQITGFTATGATTAA
ATYTSTYTGATVTPPREFGVNLRFAFGSR