Protein Info for GFF4898 in Xanthobacter sp. DMC5

Annotation: hypothetical protein

These analyses and tools can help you predict a protein's function, but be skeptical. For enzymes, over 10% of annotations from KEGG or SEED are probably incorrect. For other types of proteins, the error rates may be much higher. MetaCyc and Swiss-Prot have low error rates, but the best hits in these databases are often quite distant, so this protein's function may not be the same. TIGRFam has low error rates. Finally, many experimentally-characterized proteins are not in any of these databases. To find relevant papers, use PaperBLAST.

Protein Families and Features

1 50 100 150 200 250 300 350 410 transmembrane" amino acids 31 to 48 (18 residues), see Phobius details amino acids 54 to 76 (23 residues), see Phobius details amino acids 83 to 100 (18 residues), see Phobius details amino acids 106 to 128 (23 residues), see Phobius details amino acids 148 to 167 (20 residues), see Phobius details amino acids 187 to 204 (18 residues), see Phobius details amino acids 225 to 252 (28 residues), see Phobius details amino acids 260 to 283 (24 residues), see Phobius details amino acids 302 to 323 (22 residues), see Phobius details amino acids 378 to 398 (21 residues), see Phobius details PF07690: MFS_1" amino acids 24 to 322 (299 residues), 67.4 bits, see alignment E=5.4e-23 amino acids 237 to 408 (172 residues), 38.8 bits, see alignment E=2.8e-14

Best Hits

KEGG orthology group: None (inferred from 66% identity to smk:Sinme_0459)

Predicted SEED Role

"PUTATIVE TRANSPORT TRANSMEMBRANE PROTEIN"

Sequence Analysis Tools

PaperBLAST (search for papers about homologs of this protein)

Search CDD (the Conserved Domains Database, which includes COG and superfam)

Compare to protein structures

Predict protein localization: PSORTb (Gram-negative bacteria)

Predict transmembrane helices and signal peptides: Phobius

Check the current SEED with FIGfam search

Find homologs in fast.genomics or the ENIGMA genome browser

Find the best match in UniProt

Protein Sequence (410 amino acids)

>GFF4898 hypothetical protein (Xanthobacter sp. DMC5)
VSQVLNGPAAEGRGLFSPVSSLYAARALRDFGDGFVAVLLPVYLAAIGLDVFQIGVVATT
ALLGSALMTLAIGILGHRIDRRAVLMAASGLMVATGLAFTQSASYGAVLLVAFCGTINPS
SGSVSIFVPLEHAALSHLVADKARTAAFARYSLMGALAAALGALAAMSPDLLADFGVSRD
AALEGMFALYAVLGIAGGVFYSRISRNDASDEAQPSSALGPSRGIVYRMAALFSVDAFAG
GFAVQSLMALWLFSRFGLSLSAAGLFFFWSGVLSAFSFPVATWLSRRIGLVNTMVFTHIP
SSLCLILAAVVPSLEAALGLLLVRSALSQMDVPTRSSFVMAVVTPPERAAAASITSVPRS
LAAALSPALAGALFAAGYEAWPFILCGVLKILYDFALLRAFRHIRPPEER