Protein Info for PS417_25090 in Pseudomonas simiae WCS417

Annotation: hypothetical protein

These analyses and tools can help you predict a protein's function, but be skeptical. For enzymes, over 10% of annotations from KEGG or SEED are probably incorrect. For other types of proteins, the error rates may be much higher. MetaCyc and Swiss-Prot have low error rates, but the best hits in these databases are often quite distant, so this protein's function may not be the same. TIGRFam has low error rates. Finally, many experimentally-characterized proteins are not in any of these databases. To find relevant papers, use PaperBLAST.

Protein Families and Features

1 50 100 150 200 250 300 350 424 transmembrane" amino acids 23 to 44 (22 residues), see Phobius details amino acids 56 to 79 (24 residues), see Phobius details amino acids 97 to 121 (25 residues), see Phobius details amino acids 127 to 149 (23 residues), see Phobius details amino acids 158 to 177 (20 residues), see Phobius details amino acids 183 to 205 (23 residues), see Phobius details amino acids 292 to 314 (23 residues), see Phobius details amino acids 334 to 355 (22 residues), see Phobius details amino acids 363 to 385 (23 residues), see Phobius details amino acids 391 to 415 (25 residues), see Phobius details PF01943: Polysacc_synt" amino acids 19 to 287 (269 residues), 106.8 bits, see alignment E=7e-35

Best Hits

Predicted SEED Role

No annotation

Sequence Analysis Tools

PaperBLAST (search for papers about homologs of this protein)

Search CDD (the Conserved Domains Database, which includes COG and superfam)

Compare to protein structures

Predict protein localization: PSORTb (Gram-negative bacteria)

Predict transmembrane helices and signal peptides: Phobius

Check the current SEED with FIGfam search

Find homologs in fast.genomics or the ENIGMA genome browser

See A0A1N7UFR5 at UniProt or InterPro

Protein Sequence (424 amino acids)

>PS417_25090 hypothetical protein (Pseudomonas simiae WCS417)
MNETILHRFSFERLRQHSVTRNASALGLMQVVNFAVPLMLLPFLTRQLGMEGFGQVAVVL
AAIQVAYVLTDYGFSFSATYAISLNRDDRGYINKKIGAIFAVKALLLIPTCLALLSAAYL
ISTFNAYFDYFVIAIIAVIAQAFLPIWLFQGLERMRNVALYTVGTKVLYVLAVLWVVDGE
QDGEWVITAWALAHCLGLAIAIHLMRCDGYRLVQPEWRAIKHEFIEGAPFFWSRLAVSFY
TSASLLIVGAYSASHAAQFAVSEQIYKAGQNIASPINNALFPYMARYKDWRVFFRIVTVL
GVLMALGCLALALFAQPLLVGLFGEAYRSAEPLLLVFLLISVVNYFAVTFGYSAFSALGR
VSFANVSVMLGAVFYTVMLAAQYLFFSLDAYGIAVAILLTELVVMCLRVGAFFYFKRTLE
VAPQ