Protein Info for PS417_25080 in Pseudomonas simiae WCS417

Annotation: hypothetical protein

These analyses and tools can help you predict a protein's function, but be skeptical. For enzymes, over 10% of annotations from KEGG or SEED are probably incorrect. For other types of proteins, the error rates may be much higher. MetaCyc and Swiss-Prot have low error rates, but the best hits in these databases are often quite distant, so this protein's function may not be the same. TIGRFam has low error rates. Finally, many experimentally-characterized proteins are not in any of these databases. To find relevant papers, use PaperBLAST.

Protein Families and Features

1 50 100 150 200 250 300 365 signal peptide" amino acids 1 to 18 (18 residues), see Phobius details transmembrane" amino acids 27 to 47 (21 residues), see Phobius details amino acids 54 to 87 (34 residues), see Phobius details amino acids 99 to 119 (21 residues), see Phobius details amino acids 146 to 166 (21 residues), see Phobius details amino acids 174 to 203 (30 residues), see Phobius details amino acids 214 to 235 (22 residues), see Phobius details amino acids 288 to 312 (25 residues), see Phobius details amino acids 324 to 348 (25 residues), see Phobius details

Best Hits

Predicted SEED Role

No annotation

Sequence Analysis Tools

PaperBLAST (search for papers about homologs of this protein)

Search CDD (the Conserved Domains Database, which includes COG and superfam)

Compare to protein structures

Predict protein localization: PSORTb (Gram-negative bacteria)

Predict transmembrane helices and signal peptides: Phobius

Check the current SEED with FIGfam search

Find homologs in fast.genomics or the ENIGMA genome browser

See A0A1N7U9N2 at UniProt or InterPro

Protein Sequence (365 amino acids)

>PS417_25080 hypothetical protein (Pseudomonas simiae WCS417)
MAAIALAVSFSAYIISSLQPVFENPGLRLLIDSLRVLGLLVVLLVYLKYVKINLLFLGLA
ALAVAGVVVARDVFFAQLVVGLLFARLLFKAGFESLVGRALEVSLLFLCVIVAGVKFGYI
DSKVGINPLAATSTAFVVEKKEYWGFWQPNIISMLVSGCLIAAFYLGRSRLYWGAMLVYL
VVLTGTVSRTFLVVPVLTLLFIWIDRAGLSKSPAVLGGLLLGALSACFMSVLFVFPNALR
SIVGQAVYHNLDNILSYRLVISERIMHPLTPFELLTGWHDNKAEIDSFFINFALSQGVLI
YLVLVGYLGYVSVQAFKQKKSRELMVLLLFLVVASFEKISGISSLFYLCSCCCLFCVMSR
RSTAH