Protein Info for GFF4894 in Variovorax sp. SCN45

Annotation: FIG00715096: hypothetical protein

These analyses and tools can help you predict a protein's function, but be skeptical. For enzymes, over 10% of annotations from KEGG or SEED are probably incorrect. For other types of proteins, the error rates may be much higher. MetaCyc and Swiss-Prot have low error rates, but the best hits in these databases are often quite distant, so this protein's function may not be the same. TIGRFam has low error rates. Finally, many experimentally-characterized proteins are not in any of these databases. To find relevant papers, use PaperBLAST.

Protein Families and Features

1 50 100 150 200 262 transmembrane" amino acids 19 to 38 (20 residues), see Phobius details amino acids 44 to 63 (20 residues), see Phobius details amino acids 168 to 189 (22 residues), see Phobius details amino acids 203 to 224 (22 residues), see Phobius details

Best Hits

KEGG orthology group: None (inferred from 100% identity to rpi:Rpic_2603)

Predicted SEED Role

"FIG00715096: hypothetical protein"

Sequence Analysis Tools

PaperBLAST (search for papers about homologs of this protein)

Search CDD (the Conserved Domains Database, which includes COG and superfam)

Compare to protein structures

Predict protein localization: PSORTb (Gram-negative bacteria)

Predict transmembrane helices and signal peptides: Phobius

Check the current SEED with FIGfam search

Find homologs in fast.genomics or the ENIGMA genome browser

Find the best match in UniProt

Protein Sequence (262 amino acids)

>GFF4894 FIG00715096: hypothetical protein (Variovorax sp. SCN45)
MTTIFELVKDPYERKARVIPGLLVALPVLVPLLCVYGARHPVLTGVIGLLGGCGAIYALA
SVARGRGKKLEEMLVSKWGGMPTTIALRHRDKFLDGVSKQRYHTAITAKLGIAMPTAEEE
SANPDKADDIYIGATKRLRELTRSNKQLLLKENIAYGFHRNMLAMKPVGILSCLMGVVYG
LLIAKILQVAPLQFDLVHLADPGLAAGLTLLISLALLAAWLLYFDQDAVRRMGFVYAERL
FECLPSLPSSSSRKKAVKPTTD