Protein Info for GFF489 in Xanthobacter sp. DMC5

Annotation: hypothetical protein

These analyses and tools can help you predict a protein's function, but be skeptical. For enzymes, over 10% of annotations from KEGG or SEED are probably incorrect. For other types of proteins, the error rates may be much higher. MetaCyc and Swiss-Prot have low error rates, but the best hits in these databases are often quite distant, so this protein's function may not be the same. TIGRFam has low error rates. Finally, many experimentally-characterized proteins are not in any of these databases. To find relevant papers, use PaperBLAST.

Protein Families and Features

1 50 100 150 200 250 300 350 400 450 500 550 578 transmembrane" amino acids 20 to 40 (21 residues), see Phobius details amino acids 71 to 91 (21 residues), see Phobius details amino acids 104 to 127 (24 residues), see Phobius details amino acids 134 to 156 (23 residues), see Phobius details amino acids 192 to 211 (20 residues), see Phobius details amino acids 213 to 214 (2 residues), see Phobius details amino acids 241 to 261 (21 residues), see Phobius details amino acids 337 to 358 (22 residues), see Phobius details amino acids 377 to 400 (24 residues), see Phobius details amino acids 412 to 434 (23 residues), see Phobius details amino acids 442 to 466 (25 residues), see Phobius details amino acids 487 to 508 (22 residues), see Phobius details amino acids 545 to 564 (20 residues), see Phobius details PF00528: BPD_transp_1" amino acids 87 to 255 (169 residues), 55.7 bits, see alignment E=2.8e-19 amino acids 392 to 560 (169 residues), 44.9 bits, see alignment E=5.7e-16

Best Hits

KEGG orthology group: K02050, sulfonate/nitrate/taurine transport system permease protein (inferred from 88% identity to xau:Xaut_1269)

Predicted SEED Role

"ABC-type anion transport system, duplicated permease component"

Sequence Analysis Tools

PaperBLAST (search for papers about homologs of this protein)

Search CDD (the Conserved Domains Database, which includes COG and superfam)

Compare to protein structures

Predict protein localization: PSORTb (Gram-negative bacteria)

Predict transmembrane helices and signal peptides: Phobius

Check the current SEED with FIGfam search

Find homologs in fast.genomics or the ENIGMA genome browser

Find the best match in UniProt

Protein Sequence (578 amino acids)

>GFF489 hypothetical protein (Xanthobacter sp. DMC5)
MTMQHPALEAGRRRRFAPNLWDALAFGLLFGALILIVHGGQGTLVPLAALDQTPVSLDPA
QLPEYALRTTLRMLAAILASLVFTFLYGALAAKSRRAEMVLIPMLDILQSVPVLGFLSFT
VVGFMSLFPGKVLGVELAAIFAIFTSQAWNMTFSFYQSLKTVPRDLDEATRSFRLTGWQR
FWRLEVPFSMPGLVWNTMMSMSGGWFFVVASEAISVGDTTITLPGVGSYVALAIKEQNLP
AVGWAVLAMLAVILIYDQLLFRPLVAWADKFRVETSASGAAPSSWLLSAARRTRLFQRLL
RPLGALLSAVPRQRLALQVAVPADARRALSSPLSDKVWLALVLAMTAYCLWTIVTFVATE
LTLPEVAQAFGLGGLTMLRVIVLIALATLIWVPIGVWIGLRPAWAERVQPMAQFLAAFPA
NIIFPFAVVAIVRLGLDPDIWLSPLMVLGTQWYILFNVVAGASAFPNDLREAAGTFRIRG
WSWWKKVMLPGIFPYYVTGAITASGGSWNASIVAEVASWGDTTLRAHGIGAYIADATAAG
DYPRIVLGIAVMSIFVILFNRLLWRPLYVFAGRRLRLD