Protein Info for PS417_24995 in Pseudomonas simiae WCS417

Annotation: exotoxin

These analyses and tools can help you predict a protein's function, but be skeptical. For enzymes, over 10% of annotations from KEGG or SEED are probably incorrect. For other types of proteins, the error rates may be much higher. MetaCyc and Swiss-Prot have low error rates, but the best hits in these databases are often quite distant, so this protein's function may not be the same. TIGRFam has low error rates. Finally, many experimentally-characterized proteins are not in any of these databases. To find relevant papers, use PaperBLAST.

Protein Families and Features

1 50 100 171 signal peptide" amino acids 1 to 33 (33 residues), see Phobius details PF00419: Fimbrial" amino acids 39 to 171 (133 residues), 34.9 bits, see alignment E=9.5e-13

Best Hits

Swiss-Prot: 35% identical to YFCQ_ECOLI: Uncharacterized fimbrial-like protein YfcQ (yfcQ) from Escherichia coli (strain K12)

KEGG orthology group: None (inferred from 58% identity to pfs:PFLU1096)

Predicted SEED Role

No annotation

Sequence Analysis Tools

PaperBLAST (search for papers about homologs of this protein)

Search CDD (the Conserved Domains Database, which includes COG and superfam)

Compare to protein structures

Predict protein localization: PSORTb (Gram-negative bacteria)

Predict transmembrane helices and signal peptides: Phobius

Check the current SEED with FIGfam search

Find homologs in fast.genomics or the ENIGMA genome browser

See A0A1N7U778 at UniProt or InterPro

Protein Sequence (171 amino acids)

>PS417_24995 exotoxin (Pseudomonas simiae WCS417)
MSEETMKAKLSGMRATFVCGCLLWAVSQAVQADINVTVRGVIMAPPPCVINGGGAFDTDF
GDDLLTTRVDGNNYRVDVNHSIVCTAPTSNDMTMELLGMGTTFEGGAYLQTGQVDLGVKL
FFNGAEWPLNTPKSFTHPNYPRLEAVPVKRAGSTLSAGVFSAIATLVVAYQ