Protein Info for GFF4877 in Xanthobacter sp. DMC5

Annotation: putative protein RP812

These analyses and tools can help you predict a protein's function, but be skeptical. For enzymes, over 10% of annotations from KEGG or SEED are probably incorrect. For other types of proteins, the error rates may be much higher. MetaCyc and Swiss-Prot have low error rates, but the best hits in these databases are often quite distant, so this protein's function may not be the same. TIGRFam has low error rates. Finally, many experimentally-characterized proteins are not in any of these databases. To find relevant papers, use PaperBLAST.

Protein Families and Features

1 25 50 77 PF01722: BolA" amino acids 28 to 76 (49 residues), 57.9 bits, see alignment E=5e-20

Best Hits

Swiss-Prot: 40% identical to Y812_RICPR: Uncharacterized protein RP812 (RP812) from Rickettsia prowazekii (strain Madrid E)

KEGG orthology group: None (inferred from 94% identity to xau:Xaut_0124)

Predicted SEED Role

"YrbA protein"

Sequence Analysis Tools

PaperBLAST (search for papers about homologs of this protein)

Search CDD (the Conserved Domains Database, which includes COG and superfam)

Compare to protein structures

Predict protein localization: PSORTb (Gram-negative bacteria)

Predict transmembrane helices and signal peptides: Phobius

Check the current SEED with FIGfam search

Find homologs in fast.genomics or the ENIGMA genome browser

Find the best match in UniProt

Protein Sequence (77 amino acids)

>GFF4877 putative protein RP812 (Xanthobacter sp. DMC5)
MAMAADEIERLVKEALPDSQVVIIDLAGDGDHYAARITSEAFKGKSRVQQHQMVYAALGE
HMGGTLHALKLETLIPK