Protein Info for PS417_24950 in Pseudomonas simiae WCS417

Annotation: hypothetical protein

These analyses and tools can help you predict a protein's function, but be skeptical. For enzymes, over 10% of annotations from KEGG or SEED are probably incorrect. For other types of proteins, the error rates may be much higher. MetaCyc and Swiss-Prot have low error rates, but the best hits in these databases are often quite distant, so this protein's function may not be the same. TIGRFam has low error rates. Finally, many experimentally-characterized proteins are not in any of these databases. To find relevant papers, use PaperBLAST.

Protein Families and Features

1 100 200 300 400 500 600 700 800 900 1000 1100 1203 signal peptide" amino acids 1 to 26 (26 residues), see Phobius details transmembrane" amino acids 539 to 560 (22 residues), see Phobius details PF00497: SBP_bac_3" amino acids 66 to 277 (212 residues), 37.1 bits, see alignment E=1.1e-12 amino acids 305 to 521 (217 residues), 67.3 bits, see alignment E=5.5e-22 TIGR00229: PAS domain S-box protein" amino acids 582 to 701 (120 residues), 29.7 bits, see alignment E=3.1e-11 PF13188: PAS_8" amino acids 582 to 627 (46 residues), 22 bits, see alignment (E = 5.5e-08) PF00989: PAS" amino acids 583 to 691 (109 residues), 37.1 bits, see alignment E=1.3e-12 PF08448: PAS_4" amino acids 586 to 695 (110 residues), 33.7 bits, see alignment E=1.7e-11 PF00512: HisKA" amino acids 715 to 780 (66 residues), 63.1 bits, see alignment 9.4e-21 PF02518: HATPase_c" amino acids 827 to 941 (115 residues), 77.2 bits, see alignment E=5.9e-25 PF00072: Response_reg" amino acids 965 to 1081 (117 residues), 73 bits, see alignment E=1e-23 PF01627: Hpt" amino acids 1116 to 1191 (76 residues), 33.1 bits, see alignment 2.4e-11

Best Hits

Predicted SEED Role

"Hybrid sensory histidine kinase in two-component regulatory system with EvgA" in subsystem Orphan regulatory proteins

Sequence Analysis Tools

PaperBLAST (search for papers about homologs of this protein)

Search CDD (the Conserved Domains Database, which includes COG and superfam)

Compare to protein structures

Predict protein localization: PSORTb (Gram-negative bacteria)

Predict transmembrane helices and signal peptides: Phobius

Check the current SEED with FIGfam search

Find homologs in fast.genomics or the ENIGMA genome browser

See A0A1N7UI33 at UniProt or InterPro

Protein Sequence (1203 amino acids)

>PS417_24950 hypothetical protein (Pseudomonas simiae WCS417)
MKTLRLLLVQSLILLTCLLATTLYAQEPELTELQIHAPVTTPKVIFAPQTRAWLSNRPEV
TAAIWRGAWPPLHMGFEQNQFEGVAADYLGVIQAATGIRLKVLRFASRAEAREALLQGRV
DMLALHDVSEGQEGAITQSRPYLLNNKVIAHRIGETRQLSSDLAGQRLAYVGDDAVGALL
KQQYPKATLIQYTNHLNGLTSLIYEQADAFLTDAVVGEYLIRVLYNNDIYIAGDATTTSA
DINFAVSDRKPQLLAAINDTLNALPQNDMKRITSRWGLGDHFVADRSPLELTSEELTWIE
NHKKIKVVLAASYAPLSFYDQNNRLQGLTADLLAILAQRTGLEIDVVRSDSVSNMLKRLE
DNQVDLIAALSIGDLRLNPSQYTRPYTVSPFVVITKRQSPIRDLSELNGKRLAIPVGNPL
TKWLQQQHPGVIQVPVETAARGVELVSNGDVTASVHTQLGADYFIKHHFRSDLMISGMVG
PNPARIGMVVSTEDMPLKSIINKVLLEIPPEEFKTLSDRWRNHAAPAVASSWSTYKSSVY
KVIGVALLFLLAFLIWNYYLQAQIKKRKRAETALSDQLSFSKTLIDGSPIALYVRDKAGK
LVHCNRAYLEFLQITHEDVLGKTLPDAEILPVSLSAQYDQIYQNSEQGAEPAFADLEIEV
QGQPHRIYHWTLPFQSSAGEFSGVIGGWLDISEREQLVEQLRVAKQAADEANESKSIFLA
SMSHEIRTPISALIGLIEMLRVRGGTPQQINDNLAVAHESAQSLLSLIGDILDLSKIEAG
AMVLSPRPTRLSELLHSVHKLFEINARNKHLTFDLIIDVQDQHVIIDALMLNQIIANLVS
NAIKFTEQGFVQLSLKQSPNDSESNLARYVIEVRDSGLGLNEQQKKAIFEPFVQVVSAPT
STRGTGLGLSICMRLAQLLEAQLSVDSQPDKGSSFKLQFEAERTLPEDVQESTQPQAPAG
MSLNILVAEDHAANRLLLCQQLEYLGHNAIPCDDGETALAQWQAADPPFDLTITDCNMPH
MDGYELTRRIRTLEQSRGLGLHPIFGLTANAQSHIIQDCLDAGMTQCLFKPIGIEILAEQ
IYAVTAQIERQVKAASTTGGELEKLRILCPDAYSPLVEELINTNRQDAARLEQMLINNEL
KKISGLAHKIKGGAQLADARNLIEACMQLESLAHLDDANACEEQIKTVIQIMLSLEQELL
ETI