Protein Info for PS417_24905 in Pseudomonas simiae WCS417

Annotation: DNA-binding protein

These analyses and tools can help you predict a protein's function, but be skeptical. For enzymes, over 10% of annotations from KEGG or SEED are probably incorrect. For other types of proteins, the error rates may be much higher. MetaCyc and Swiss-Prot have low error rates, but the best hits in these databases are often quite distant, so this protein's function may not be the same. TIGRFam has low error rates. Finally, many experimentally-characterized proteins are not in any of these databases. To find relevant papers, use PaperBLAST.

Protein Families and Features

1 50 114 PF13560: HTH_31" amino acids 12 to 65 (54 residues), 40.6 bits, see alignment E=3.7e-14 PF01381: HTH_3" amino acids 16 to 70 (55 residues), 53.1 bits, see alignment E=4.1e-18 PF04545: Sigma70_r4" amino acids 18 to 46 (29 residues), 26.1 bits, see alignment E=7.2e-10

Best Hits

KEGG orthology group: None (inferred from 60% identity to bcj:BCAL1192)

Predicted SEED Role

No annotation

Sequence Analysis Tools

PaperBLAST (search for papers about homologs of this protein)

Search CDD (the Conserved Domains Database, which includes COG and superfam)

Search structures

Predict protein localization: PSORTb (Gram-negative bacteria)

Predict transmembrane helices and signal peptides: Phobius

Check the current SEED with FIGfam search

Find homologs in fast.genomics or the ENIGMA genome browser

See A0A1N7UCQ2 at UniProt or InterPro

Protein Sequence (114 amino acids)

>PS417_24905 DNA-binding protein (Pseudomonas simiae WCS417)
MKTNHKDLAEAVGRAIARQRMRAGLTQEEVAERLGVGNEAVSRIERGIVIPNIIRLFDFA
SIFGCEATELLSESSPLPDDQASRLSQLLVTLNQSDRQLLVEVIDRLSERLARG