Protein Info for GFF4860 in Variovorax sp. SCN45

Annotation: Transcriptional regulator, AraC family

These analyses and tools can help you predict a protein's function, but be skeptical. For enzymes, over 10% of annotations from KEGG or SEED are probably incorrect. For other types of proteins, the error rates may be much higher. MetaCyc and Swiss-Prot have low error rates, but the best hits in these databases are often quite distant, so this protein's function may not be the same. TIGRFam has low error rates. Finally, many experimentally-characterized proteins are not in any of these databases. To find relevant papers, use PaperBLAST.

Protein Families and Features

1 50 100 150 200 250 300 342 PF12625: Arabinose_bd" amino acids 34 to 211 (178 residues), 95 bits, see alignment E=6.1e-31 PF12833: HTH_18" amino acids 261 to 338 (78 residues), 59.5 bits, see alignment E=3.3e-20

Best Hits

KEGG orthology group: None (inferred from 100% identity to rpi:Rpic_2633)

Predicted SEED Role

No annotation

Sequence Analysis Tools

PaperBLAST (search for papers about homologs of this protein)

Search CDD (the Conserved Domains Database, which includes COG and superfam)

Search structures

Predict protein localization: PSORTb (Gram-negative bacteria)

Predict transmembrane helices and signal peptides: Phobius

Check the current SEED with FIGfam search

Find homologs in fast.genomics or the ENIGMA genome browser

Find the best match in UniProt

Protein Sequence (342 amino acids)

>GFF4860 Transcriptional regulator, AraC family (Variovorax sp. SCN45)
MLQPVFTAPIFAVHGLLDGARGKGLATQEWLKGVLGRAGISESLLELKDSRVTVEQFNAL
FIAVKDSLNDECLGYLHERPMRPGSFALMVRSAFTAHSLSCALRRLSESFALLQDDVTLV
PVTEGALGGFALEMRGGPGAHAEFLHAHLLRVFWRLLLWLHGGRLVPQRFDFNFALPLHA
MSYGRIFSGTLCFGQPRTAAWFDADAFKQPVRRDRDALQSFLRATPGNVVGPYLNERSAS
ARVRMVLQRASPEWPDLVVTAQRLHLSVSALQRHLASEGTSFQALKDQLRRDMAIVRLTS
SEASLVAIAADLGFTDSTAFQRAFKVWTGSAPGAYRARSRSR