Protein Info for GFF485 in Hydrogenophaga sp. GW460-11-11-14-LB1

Annotation: putative protein PaaI, possibly involved in aromatic compounds catabolism

These analyses and tools can help you predict a protein's function, but be skeptical. For enzymes, over 10% of annotations from KEGG or SEED are probably incorrect. For other types of proteins, the error rates may be much higher. MetaCyc and Swiss-Prot have low error rates, but the best hits in these databases are often quite distant, so this protein's function may not be the same. TIGRFam has low error rates. Finally, many experimentally-characterized proteins are not in any of these databases. To find relevant papers, use PaperBLAST.

Protein Families and Features

1 50 100 164 TIGR00369: uncharacterized domain 1" amino acids 35 to 161 (127 residues), 39.8 bits, see alignment E=2.1e-14 PF03061: 4HBT" amino acids 65 to 155 (91 residues), 33.2 bits, see alignment E=2.6e-12

Best Hits

KEGG orthology group: None (inferred from 66% identity to rfr:Rfer_3505)

Predicted SEED Role

"putative protein PaaI, possibly involved in aromatic compounds catabolism"

Sequence Analysis Tools

PaperBLAST (search for papers about homologs of this protein)

Search CDD (the Conserved Domains Database, which includes COG and superfam)

Compare to protein structures

Predict protein localization: PSORTb (Gram-negative bacteria)

Predict transmembrane helices and signal peptides: Phobius

Check the current SEED with FIGfam search

Find homologs in fast.genomics or the ENIGMA genome browser

Find the best match in UniProt

Protein Sequence (164 amino acids)

>GFF485 putative protein PaaI, possibly involved in aromatic compounds catabolism (Hydrogenophaga sp. GW460-11-11-14-LB1)
MSKHTAAPASAPVEFEPEFIAVLKDLFENKIVFNKVLGLKIEAIRPEGVTARIDMKPDLI
GHYQHGRVHGGVVSAALDAMGGLACVAANGARHMNEEPLQRLQRFSKLGTIDLRIDYLRP
CVGEYFLLSAEVLRLGSRVANTRMAFMGADGKLLCVGAGAYIVS