Protein Info for GFF484 in Sphingobium sp. HT1-2

Annotation: Predicted carboxypeptidase

These analyses and tools can help you predict a protein's function, but be skeptical. For enzymes, over 10% of annotations from KEGG or SEED are probably incorrect. For other types of proteins, the error rates may be much higher. MetaCyc and Swiss-Prot have low error rates, but the best hits in these databases are often quite distant, so this protein's function may not be the same. TIGRFam has low error rates. Finally, many experimentally-characterized proteins are not in any of these databases. To find relevant papers, use PaperBLAST.

Protein Families and Features

1 50 100 150 200 250 300 350 376 PF18027: Pepdidase_M14_N" amino acids 5 to 114 (110 residues), 120.5 bits, see alignment E=3.7e-39 PF00246: Peptidase_M14" amino acids 135 to 233 (99 residues), 46.7 bits, see alignment E=3.5e-16

Best Hits

Swiss-Prot: 63% identical to Y1242_ZYMMO: Uncharacterized protein ZMO1242 (ZMO1242) from Zymomonas mobilis subsp. mobilis (strain ATCC 31821 / ZM4 / CP4)

KEGG orthology group: None (inferred from 86% identity to sjp:SJA_C1-33480)

Predicted SEED Role

"Predicted carboxypeptidase"

Sequence Analysis Tools

PaperBLAST (search for papers about homologs of this protein)

Search CDD (the Conserved Domains Database, which includes COG and superfam)

Compare to protein structures

Predict protein localization: PSORTb (Gram-negative bacteria)

Predict transmembrane helices and signal peptides: Phobius

Check the current SEED with FIGfam search

Find homologs in fast.genomics or the ENIGMA genome browser

Find the best match in UniProt

Protein Sequence (376 amino acids)

>GFF484 Predicted carboxypeptidase (Sphingobium sp. HT1-2)
MTISISSAFDSGNIRVLSITENPEGVRAELEIVKDKDSDFYQWFHFRLAGAAGREVELAI
VNCAGSAYPDGWPGYKARMSEDRENWLQADTDYADGTLTIRLSPDSNAVWLAYFAPYSME
RHHDLVAWAACQPGVEHRELGLTLDGQPLDMLSVGEGPKNVWLYARQHPGESMAEWWMEG
ALERLTDDEDAVARYLRQKATFHIVPNMNPDGGRRGHLRTNAAGVNLNREWHEPSMDKSP
EVYLVRAAMDETGVDFAMDVHGDEAIPAVFLAGFEGIPSITDRQLSLYHRYRDTLAARTP
DFQTRLGYPVAGGGKANLAMSTNQLAERFGAVAMTLEMPFKDNDDLPDADFGWSPARSAQ
LGKDCLAVLAEMIEDI