Protein Info for GFF483 in Xanthobacter sp. DMC5

Annotation: Sensor histidine kinase RcsC

These analyses and tools can help you predict a protein's function, but be skeptical. For enzymes, over 10% of annotations from KEGG or SEED are probably incorrect. For other types of proteins, the error rates may be much higher. MetaCyc and Swiss-Prot have low error rates, but the best hits in these databases are often quite distant, so this protein's function may not be the same. TIGRFam has low error rates. Finally, many experimentally-characterized proteins are not in any of these databases. To find relevant papers, use PaperBLAST.

Protein Families and Features

1 100 200 300 400 500 600 700 800 900 1000 1100 1200 1300 1423 PF01339: CheB_methylest" amino acids 13 to 177 (165 residues), 152.6 bits, see alignment E=4.8e-48 PF03705: CheR_N" amino acids 193 to 245 (53 residues), 32.5 bits, see alignment (E = 2.9e-11) PF01739: CheR" amino acids 258 to 445 (188 residues), 166.6 bits, see alignment E=2.3e-52 PF13596: PAS_10" amino acids 705 to 810 (106 residues), 99.2 bits, see alignment 1e-31 PF08448: PAS_4" amino acids 711 to 814 (104 residues), 41.3 bits, see alignment 8.4e-14 PF00512: HisKA" amino acids 832 to 897 (66 residues), 37.3 bits, see alignment 1.2e-12 PF02518: HATPase_c" amino acids 942 to 1051 (110 residues), 78.8 bits, see alignment 2.2e-25 PF00072: Response_reg" amino acids 1079 to 1191 (113 residues), 59.5 bits, see alignment E=1.8e-19 amino acids 1221 to 1330 (110 residues), 93.5 bits, see alignment 4.9e-30 PF08281: Sigma70_r4_2" amino acids 1350 to 1397 (48 residues), 28.7 bits, see alignment (E = 4.3e-10) PF00196: GerE" amino acids 1354 to 1410 (57 residues), 58.9 bits, see alignment (E = 1.6e-19)

Best Hits

Predicted SEED Role

"Chemotaxis protein methyltransferase CheR (EC 2.1.1.80)" in subsystem Bacterial Chemotaxis (EC 2.1.1.80)

Isozymes

Compare fitness of predicted isozymes for: 2.1.1.80

Use Curated BLAST to search for 2.1.1.80

Sequence Analysis Tools

PaperBLAST (search for papers about homologs of this protein)

Search CDD (the Conserved Domains Database, which includes COG and superfam)

Compare to protein structures

Predict protein localization: PSORTb (Gram-negative bacteria)

Predict transmembrane helices and signal peptides: Phobius

Check the current SEED with FIGfam search

Find homologs in fast.genomics or the ENIGMA genome browser

Find the best match in UniProt

Protein Sequence (1423 amino acids)

>GFF483 Sensor histidine kinase RcsC (Xanthobacter sp. DMC5)
MWSASGLRPVGSACKRLLSTLPGGHRMAFILVLHLDPTHESLMADLLAPHTSMVVQQAAD
GMLVEADHLYVIPPAFYLSVEAGHLRLSTPEAPHGARLPFDFLLKSLAGEYGAAAMGVVL
SGTGTDGTIGLEAVRVKGGFTVAQDPKEADYDGMPRSAIGAGAVDLVAPVTEIPEALLAR
ARQPADAPAPSALARIVALLRASTAFDFTLYKPGTLQRRTERRMALAAMGTGEMDRYLEV
LRKDPVELDLLAKDLLINVTGFFRDPEVFTALEEKIIPDLVRDHPPGRPLRVWVPACSTG
EEAYSLAMLFFEAIAALKRSVHVQVFASDVDPDAVVKAREGFYPDAVTESVSPQRLERFF
VKDSGGFRVSADLRAAVVFTVQNVLADPPFSRLDMISCRNLLIYLTPEAQAKAISLFHFA
LLDNGLLLLGTSEEMNGGDLRFALLSKPLRLYRRVGQRRSGALPFPIGTKDGVYLPVRPA
KVATPSRQAAFAELCRQVVLDSYAPAAVLINRACECLYYLGSTDPYLRLVPGHPTQDLLS
MAREGIRTKLRAAIHQASQDKKRVVVTGGRARRDGEPFSFSIAVHPLQSEGEDLLLVCFL
DAATPGVSPAPSHPTRSVSRVTELERELETTRAELEGAIRNLELSSEEQKAVNEEALSVN
EEFQSTNEELLASKEELQSLNEELTALNGQLQETLERQRTTSSDLQNVLYSTDVATLFLD
TEMKIRFFTPATRALFNVIPSDVGRPLSDLNSLAADATLITDVKAVLSDQAAQEQEIETR
DGAWYLRRILPYRTQAGGVDGVVITFVDVTERRRAADALETAKHDAELANNAKSRFLAAA
SHDLRQPLQSLVLLQGLLAKVASGEKVERLVKRLDETISAMSGMLNALLDINQIEAGTIK
AEIVTFPINDLLDRMREELTYHARSAKLSLSVIPCSLSVESDPRLLEQMLRNLISNALKY
TPRGRVLVGCRRHGPWLRIEVWDTGIGIPETELRAIFDEYHQLHNAARERNLGLGLGLSI
VQRLGRLLEHPVQVRSRPEHGSVFSIDVKLAPPAPERRVPALPAPLPGKDTGSRKAAAVL
VIEDDPDVRSLLELLLTTEGHAVTVAPDGDTAVALVERNAIRPELILADYNLPNGMTGLE
TASRLRARLGRRIPVVIVTGDISTTTLRDIAGQDCVQLNKPVKADELTLIIQRLLAARPS
PVAQDAPAPVGEHAPAASPTVFIVDDDDLVRQGMRSVLEEDGRTVEDYDSCEAFIEAFGT
GRPGCLLVDAYLPGMKGLELLKHLQASSHGMAAIMITGNSDVRMAVEAMKAGAFDFIEKP
VGRRDLLACVTQALDQAQNAQRPVWHAAAAEQLSSLTHRQREILDLVLAGHPSKNIAADL
GISQRTVENHRAAIMKKTGAKSLPALARIALSAAWTGAGEHFN