Protein Info for GFF4820 in Sphingobium sp. HT1-2

Annotation: Glycosyl transferase, group 1

These analyses and tools can help you predict a protein's function, but be skeptical. For enzymes, over 10% of annotations from KEGG or SEED are probably incorrect. For other types of proteins, the error rates may be much higher. MetaCyc and Swiss-Prot have low error rates, but the best hits in these databases are often quite distant, so this protein's function may not be the same. TIGRFam has low error rates. Finally, many experimentally-characterized proteins are not in any of these databases. To find relevant papers, use PaperBLAST.

Protein Families and Features

1 50 100 150 200 250 300 364 PF13439: Glyco_transf_4" amino acids 18 to 119 (102 residues), 40.1 bits, see alignment E=5.8e-14 PF00534: Glycos_transf_1" amino acids 171 to 312 (142 residues), 87.9 bits, see alignment E=8.8e-29 PF13692: Glyco_trans_1_4" amino acids 174 to 307 (134 residues), 74.6 bits, see alignment E=1.5e-24

Best Hits

KEGG orthology group: None (inferred from 80% identity to sjp:SJA_C1-25860)

Predicted SEED Role

"Glycosyl transferase, group 1"

Sequence Analysis Tools

PaperBLAST (search for papers about homologs of this protein)

Search CDD (the Conserved Domains Database, which includes COG and superfam)

Compare to protein structures

Predict protein localization: PSORTb (Gram-negative bacteria)

Predict transmembrane helices and signal peptides: Phobius

Check the current SEED with FIGfam search

Find homologs in fast.genomics or the ENIGMA genome browser

Find the best match in UniProt

Protein Sequence (364 amino acids)

>GFF4820 Glycosyl transferase, group 1 (Sphingobium sp. HT1-2)
MKIAQIAPLAESVPPKLYGGTERIVSYLTEALVHQGHEVTLFASGDSQTSAELVPITPAA
LRLTPGIVDTIPYHMMMLDAVRQRADEFDALHFHIDLLHLPMIQDFIGRTVTTLHGRLDL
PDLPPFYRCFGDHCLVSISDHQRQPMPPVNWGATIYHGLPVDLLQPSLGAGEGYLAFLGR
ISPEKRPDRAIRIAARAGIELRIAAKIDAVDRGYWEEEIAPLIKLYPNIRFIGEINEQQK
ADFLGGARALLFPIDWPEPFGLVMIEAMACGTPVIAFRCGSVPEIIEHGRSGFIVDSEDQ
AVEAVGQLRHLERARVRGAFDARFTAGRMAADYAALYHRLPGARTDAAWLRRQRGEESEL
QIVA