Protein Info for PS417_00245 in Pseudomonas simiae WCS417

Annotation: oligopeptidase A

These analyses and tools can help you predict a protein's function, but be skeptical. For enzymes, over 10% of annotations from KEGG or SEED are probably incorrect. For other types of proteins, the error rates may be much higher. MetaCyc and Swiss-Prot have low error rates, but the best hits in these databases are often quite distant, so this protein's function may not be the same. TIGRFam has low error rates. Finally, many experimentally-characterized proteins are not in any of these databases. To find relevant papers, use PaperBLAST.

Protein Families and Features

1 50 100 150 200 250 300 350 400 450 500 550 600 650 683 PF19310: TOP_N" amino acids 49 to 151 (103 residues), 87.3 bits, see alignment E=7.3e-29 PF01432: Peptidase_M3" amino acids 225 to 676 (452 residues), 504.4 bits, see alignment E=4.4e-155

Best Hits

Swiss-Prot: 58% identical to OPDA_SALTY: Oligopeptidase A (prlC) from Salmonella typhimurium (strain LT2 / SGSC1412 / ATCC 700720)

KEGG orthology group: K01414, oligopeptidase A [EC: 3.4.24.70] (inferred from 99% identity to pfs:PFLU0048)

MetaCyc: 59% identical to oligopeptidase A (Escherichia coli K-12 substr. MG1655)
Oligopeptidase A. [EC: 3.4.24.70]

Predicted SEED Role

"Oligopeptidase A (EC 3.4.24.70)" in subsystem Protein degradation (EC 3.4.24.70)

Isozymes

No predicted isozymes

Use Curated BLAST to search for 3.4.24.70

Sequence Analysis Tools

PaperBLAST (search for papers about homologs of this protein)

Search CDD (the Conserved Domains Database, which includes COG and superfam)

Compare to protein structures

Predict protein localization: PSORTb (Gram-negative bacteria)

Predict transmembrane helices and signal peptides: Phobius

Check the current SEED with FIGfam search

Find homologs in fast.genomics or the ENIGMA genome browser

See A0A1N7TV43 at UniProt or InterPro

Protein Sequence (683 amino acids)

>PS417_00245 oligopeptidase A (Pseudomonas simiae WCS417)
MSANNPLLQSYDLPPFSAIRAEHVQPAIEQILADNRVAIEGILQSQGKHPTWAGLVLAMD
ELNDRLGAAWSPVSHLNAVCNSAELREAYEGCLPALSAYSTEMGQNRELFQAFEALANSP
EAAGFDVAQKTILEHALRDFRLSGIDLPPEQQKRYAEVQSKLSELGSKFSNQLLDATQAW
TKHVTDEATLAGLTDSAKAQMAAAAQAKGLDGWLITLEFPSYYAVMTYAQDRALREEVYA
AYCTRASDQGPNAGQNDNGPVMEQILDLRQELAKLLGYASFSELSLATKMAESSDQVLNF
LRDLAKRSKPFAAQDLQQLKAYAAEQGCADLQSWDSGFYGEKLREQRYSVSQEALRAYFP
IDKVLGGLFAIVQRLYGIEIAEQKGFDTWHPDVRLFEIKENGQHVGRFFFDLYARANKRG
GAWMDGARDRRRTIDGVLQSPVANLVCNFTPADSGKPALLTHDEVTTLFHEFGHGLHHLL
TRVEHAGVSGINGVAWDAVELPSQFMENWCWEPEGLALISGHYETGEPLPQDLLEKMLAA
KNFQSGLMMVRQLEFSLFDFELHATHGDGRSVAQVLEGVRDEVSVMRPPAYNRFPNSFAH
IFAGGYAAGYYSYKWAEVLSADAFSKFEEEGVLNAETGRAFREAILARGGSQEPMVLFVD
FRGRAPSIDALLRHSGLSEDAAA