Protein Info for PS417_24535 in Pseudomonas simiae WCS417

Annotation: membrane protein

These analyses and tools can help you predict a protein's function, but be skeptical. For enzymes, over 10% of annotations from KEGG or SEED are probably incorrect. For other types of proteins, the error rates may be much higher. MetaCyc and Swiss-Prot have low error rates, but the best hits in these databases are often quite distant, so this protein's function may not be the same. TIGRFam has low error rates. Finally, many experimentally-characterized proteins are not in any of these databases. To find relevant papers, use PaperBLAST.

Protein Families and Features

1 50 100 150 219 transmembrane" amino acids 20 to 39 (20 residues), see Phobius details amino acids 51 to 73 (23 residues), see Phobius details amino acids 85 to 109 (25 residues), see Phobius details amino acids 114 to 134 (21 residues), see Phobius details amino acids 154 to 172 (19 residues), see Phobius details amino acids 193 to 213 (21 residues), see Phobius details PF06790: UPF0259" amino acids 66 to 211 (146 residues), 34.7 bits, see alignment E=8.5e-13

Best Hits

KEGG orthology group: None (inferred from 98% identity to pfs:PFLU5387)

Predicted SEED Role

"FIG00958173: hypothetical protein"

Sequence Analysis Tools

PaperBLAST (search for papers about homologs of this protein)

Search CDD (the Conserved Domains Database, which includes COG and superfam)

Search structures

Predict protein localization: PSORTb (Gram-negative bacteria)

Predict transmembrane helices and signal peptides: Phobius

Check the current SEED with FIGfam search

Find homologs in fast.genomics or the ENIGMA genome browser

See A0A1N7UFG5 at UniProt or InterPro

Protein Sequence (219 amino acids)

>PS417_24535 membrane protein (Pseudomonas simiae WCS417)
MNPLDVLRDSFRFTQRNLGAIVQLCLPLVIFEALLQQVLNHVVGPDAFPGYSVVVGLLVY
PLYTGALILFLDARTRGESPGTKDVWAMALTLWPRFALLTAMSTLLILLGLSLYFLPGLW
LMVVLAFAEYLLVLRGMPALEAMKESFRLSRGHFWLILVCLLCVMTPLWLLKGASVAAYP
TPAPLLGLLLDSAHSFLQLFTSVVLFRLFMLIGGDADAR