Protein Info for GFF4789 in Xanthobacter sp. DMC5

Annotation: hypothetical protein

These analyses and tools can help you predict a protein's function, but be skeptical. For enzymes, over 10% of annotations from KEGG or SEED are probably incorrect. For other types of proteins, the error rates may be much higher. MetaCyc and Swiss-Prot have low error rates, but the best hits in these databases are often quite distant, so this protein's function may not be the same. TIGRFam has low error rates. Finally, many experimentally-characterized proteins are not in any of these databases. To find relevant papers, use PaperBLAST.

Protein Families and Features

1 50 100 150 200 250 300 350 400 460 transmembrane" amino acids 61 to 77 (17 residues), see Phobius details PF13458: Peripla_BP_6" amino acids 84 to 426 (343 residues), 181.6 bits, see alignment E=5.2e-57 PF13433: Peripla_BP_5" amino acids 90 to 393 (304 residues), 31.5 bits, see alignment E=1.6e-11 PF01094: ANF_receptor" amino acids 105 to 395 (291 residues), 52.4 bits, see alignment E=6.7e-18

Best Hits

Predicted SEED Role

No annotation

Sequence Analysis Tools

PaperBLAST (search for papers about homologs of this protein)

Search CDD (the Conserved Domains Database, which includes COG and superfam)

Compare to protein structures

Predict protein localization: PSORTb (Gram-negative bacteria)

Predict transmembrane helices and signal peptides: Phobius

Check the current SEED with FIGfam search

Find homologs in fast.genomics or the ENIGMA genome browser

Find the best match in UniProt

Protein Sequence (460 amino acids)

>GFF4789 hypothetical protein (Xanthobacter sp. DMC5)
MPRTTGRRSAALLSPPRSVRPTAGNRTLVLIPPFGLSRSASPVDTHTNVTQPQGKMMRLR
HCLYAGLALAASTLLVQETRAQEPIRLPMITPLTGSIAVLGQDSKKAAEVAQDIINAAGG
IGGRPLQLEIVDTQGRPEIARREMERLTREGRAPVVLACDISAGTSGAAQFAESAQVPLL
NGSAVSADILARGYKWYFSHQMSSDDEAATAFAYMKTATGAKPLAERRIALLYEDSPRGA
GTGERLRKLMDANGVKVVSETTYNRADRNLLPVMRKVQDSTPELVIWIGYTEDVVAGMKA
ARQLDFKPYVLGIGGGMGDPRLPELVDPAIIEQLHVVNVDYFNPDIKRAAAFRNAYLEKF
GTEPSSYAGTCYAAIFTLKAALEAALKASPDLTTTSMRDAFRKLDIPGDQTVTSFRSIRF
DPTNGRNLGAEDLVAAWVDGKRKVTVFPPSIAVGKPVMLP