Protein Info for PS417_24495 in Pseudomonas simiae WCS417

Annotation: NAD(FAD)-utilizing dehydrogenase

These analyses and tools can help you predict a protein's function, but be skeptical. For enzymes, over 10% of annotations from KEGG or SEED are probably incorrect. For other types of proteins, the error rates may be much higher. MetaCyc and Swiss-Prot have low error rates, but the best hits in these databases are often quite distant, so this protein's function may not be the same. TIGRFam has low error rates. Finally, many experimentally-characterized proteins are not in any of these databases. To find relevant papers, use PaperBLAST.

Protein Families and Features

1 50 100 150 200 250 300 350 408 PF03486: HI0933_like" amino acids 8 to 400 (393 residues), 386.6 bits, see alignment E=4.4e-119 PF07992: Pyr_redox_2" amino acids 8 to 179 (172 residues), 30.4 bits, see alignment E=1e-10 PF01494: FAD_binding_3" amino acids 9 to 33 (25 residues), 27.4 bits, see alignment (E = 7.3e-10) TIGR00275: flavoprotein, HI0933 family" amino acids 9 to 400 (392 residues), 292.3 bits, see alignment E=5.5e-91 PF13450: NAD_binding_8" amino acids 11 to 42 (32 residues), 24.3 bits, see alignment (E = 1.1e-08) TIGR03862: flavoprotein, TIGR03862 family" amino acids 29 to 406 (378 residues), 544.7 bits, see alignment E=9.7e-168

Best Hits

KEGG orthology group: K07007, (no description) (inferred from 96% identity to pfs:PFLU5377)

Predicted SEED Role

"NAD(FAD)-utilizing dehydrogenases"

Sequence Analysis Tools

PaperBLAST (search for papers about homologs of this protein)

Search CDD (the Conserved Domains Database, which includes COG and superfam)

Search structures

Predict protein localization: PSORTb (Gram-negative bacteria)

Predict transmembrane helices and signal peptides: Phobius

Check the current SEED with FIGfam search

Find homologs in fast.genomics or the ENIGMA genome browser

See U1U1T0 at UniProt or InterPro

Protein Sequence (408 amino acids)

>PS417_24495 NAD(FAD)-utilizing dehydrogenase (Pseudomonas simiae WCS417)
MPQTPPPHVAIIGGGPAGLMAAEVLSQAGVRVDLYDGMPSVGRKFLLAGVGGMNITHSEA
YPAFLSRYAERAPHMAPLLRAFGAEALCEWIHGLGIETFVGTSGRVFPTDMKAAPLLRAW
LKRLRDQGVVIHTRHRWVGWNAEGDLLIHSPDGEKTVHSDAVLLALGGGSWSRLGSDGAW
LKLLEDKGVPYAPLQPSNCGFEVSAWSELMVSKFAGAPLKNVAIGLGDDKPRLGECVVTA
MGIEGSLIYALSAPIREVINRDGSATVHIDLLPSKPLDKVQAALAKPRGSRSMSKHLHSQ
LGLDGVKAALLRELAPADHFNDPAQLAVDIKALPLTLVKTRPMDEAISTAGGVPFEALDE
RLMLKPLPGVFCAGEMLDWEAPTGGYLLTGCFASGRAAGRGMLEWLKR