Protein Info for GFF4785 in Variovorax sp. SCN45

Annotation: AttF component of AttEFGH ABC transport system / AttG component of AttEFGH ABC transport system

These analyses and tools can help you predict a protein's function, but be skeptical. For enzymes, over 10% of annotations from KEGG or SEED are probably incorrect. For other types of proteins, the error rates may be much higher. MetaCyc and Swiss-Prot have low error rates, but the best hits in these databases are often quite distant, so this protein's function may not be the same. TIGRFam has low error rates. Finally, many experimentally-characterized proteins are not in any of these databases. To find relevant papers, use PaperBLAST.

Protein Families and Features

1 50 100 150 200 250 300 350 400 450 500 550 600 650 700 750 800 869 signal peptide" amino acids 1 to 20 (20 residues), see Phobius details transmembrane" amino acids 21 to 40 (20 residues), see Phobius details amino acids 262 to 285 (24 residues), see Phobius details amino acids 310 to 336 (27 residues), see Phobius details amino acids 356 to 379 (24 residues), see Phobius details amino acids 407 to 426 (20 residues), see Phobius details amino acids 432 to 455 (24 residues), see Phobius details amino acids 482 to 504 (23 residues), see Phobius details amino acids 740 to 763 (24 residues), see Phobius details amino acids 783 to 811 (29 residues), see Phobius details amino acids 831 to 852 (22 residues), see Phobius details PF02687: FtsX" amino acids 264 to 383 (120 residues), 49.7 bits, see alignment E=1.8e-17 amino acids 744 to 857 (114 residues), 63.6 bits, see alignment E=9.3e-22

Best Hits

KEGG orthology group: K02004, (no description) (inferred from 89% identity to vpe:Varpa_3991)

Predicted SEED Role

"AttF component of AttEFGH ABC transport system / AttG component of AttEFGH ABC transport system"

Sequence Analysis Tools

PaperBLAST (search for papers about homologs of this protein)

Search CDD (the Conserved Domains Database, which includes COG and superfam)

Compare to protein structures

Predict protein localization: PSORTb (Gram-negative bacteria)

Predict transmembrane helices and signal peptides: Phobius

Check the current SEED with FIGfam search

Find homologs in fast.genomics or the ENIGMA genome browser

Find the best match in UniProt

Protein Sequence (869 amino acids)

>GFF4785 AttF component of AttEFGH ABC transport system / AttG component of AttEFGH ABC transport system (Variovorax sp. SCN45)
MRALLTTFSWQELRHHPWRNAAAVLAVMLGVALAFSVQLINASALDEFSSAVRSVNGQPD
LEVRAVQGGFDEAVFARIAQHPQVTLASPVLEFQGLALAAGERQVPMRVIGVDALVLPTI
APALMPQASAGADRFALFAPGHVFLNNAARSALGLPAQAAGGAAETVQLRSGDAWRRLDV
AGHVAAGGTALAVMDIAAAQELFGQIGQLSRIDLRLAPGTDRAAFMASLRQSPGWPAGVQ
FAEPGDAAERVSNLSRAYRVNLTVLALVALFTGAFLVFSVLALSVAKRAQQFALLGVLGL
TPRERLRLVLAESLVLGLIGSAAGLALGTALAAFALRVLGGDLGGGYFEGVAPKLHWSAG
AAALYGGLGVLAALVGGWWPARAAQALPEAQTLKGLGAAPTRGNSHWLALGLIALGAVLA
NVPAIGGIPVAAYLSVACLLVGGITALPWLIALLYDRIAPVFAQRLLPMLAVERARRMRG
TAAVAVSGVVASLSLAVALTVMVASFRDSVTHWLDVVLPADLYVRATSGGRGGNAGNGNS
TDTATFPPAFVQALAQLPGVARTGTLRTQTLQLDATRPAVTLIARSLEGGATQSLPLVGA
ALPVPEGQVGIYVSEPMVELYGAKPGTVFAPLSAAMGSAVGVQGKAQAFFVAGVWRDYAR
QFGAITMDARDFERITGERNVSDVALWLAPGASEGAVQAQVRQLAARQGGGSADAVEIAS
VGQIRTTSLRIFDRSFAVTYWLQAVAIAIGLFGIAASFSAQVLARRKEFGLLAHLGFTRR
QVLAVVAGEGAAWTAIGAVAGLGLGLAVSVVLVKVVNPQSFHWSMDLLVPWLRLLGLCGA
VVVAGTVTAWLAGRAAAGRDVVLAVKEDW