Protein Info for PS417_24440 in Pseudomonas simiae WCS417

Annotation: TetR family transcriptional regulator

These analyses and tools can help you predict a protein's function, but be skeptical. For enzymes, over 10% of annotations from KEGG or SEED are probably incorrect. For other types of proteins, the error rates may be much higher. MetaCyc and Swiss-Prot have low error rates, but the best hits in these databases are often quite distant, so this protein's function may not be the same. TIGRFam has low error rates. Finally, many experimentally-characterized proteins are not in any of these databases. To find relevant papers, use PaperBLAST.

Protein Families and Features

1 50 100 150 213 PF00440: TetR_N" amino acids 21 to 67 (47 residues), 48.9 bits, see alignment 4.4e-17 PF17938: TetR_C_29" amino acids 89 to 207 (119 residues), 154.3 bits, see alignment E=1.5e-49

Best Hits

Swiss-Prot: 33% identical to NICS_PSEPK: HTH-type transcriptional repressor NicS (nicS) from Pseudomonas putida (strain ATCC 47054 / DSM 6125 / NCIMB 11950 / KT2440)

KEGG orthology group: None (inferred from 96% identity to pfs:PFLU5366)

Predicted SEED Role

No annotation

Sequence Analysis Tools

PaperBLAST (search for papers about homologs of this protein)

Search CDD (the Conserved Domains Database, which includes COG and superfam)

Compare to protein structures

Predict protein localization: PSORTb (Gram-negative bacteria)

Predict transmembrane helices and signal peptides: Phobius

Check the current SEED with FIGfam search

Find homologs in fast.genomics or the ENIGMA genome browser

See A0A1N7U444 at UniProt or InterPro

Protein Sequence (213 amino acids)

>PS417_24440 TetR family transcriptional regulator (Pseudomonas simiae WCS417)
MTTEAPRKSRKNNPEKTRENILQEAIVEFVQQGLSGARVDAIAERIHTSKRMIYYYFGSK
EQLYVEVLEKLYGDIRTTETRMNLTALEPREAIRRLVEFTFDHHDQNVDFVRIVSIENIH
NAEYVKRSDSIKAMNSNILEALGATLRRGAELGLFREGLEPLDVHLLINSFSFYRVSNRH
TFSEIFQIELSDEAVKQRHRDMICDSVMRYLQA