Protein Info for PS417_24355 in Pseudomonas simiae WCS417

Annotation: MFS transporter

These analyses and tools can help you predict a protein's function, but be skeptical. For enzymes, over 10% of annotations from KEGG or SEED are probably incorrect. For other types of proteins, the error rates may be much higher. MetaCyc and Swiss-Prot have low error rates, but the best hits in these databases are often quite distant, so this protein's function may not be the same. TIGRFam has low error rates. Finally, many experimentally-characterized proteins are not in any of these databases. To find relevant papers, use PaperBLAST.

Protein Families and Features

1 50 100 150 200 250 300 350 412 transmembrane" amino acids 16 to 41 (26 residues), see Phobius details amino acids 47 to 68 (22 residues), see Phobius details amino acids 80 to 100 (21 residues), see Phobius details amino acids 107 to 123 (17 residues), see Phobius details amino acids 150 to 168 (19 residues), see Phobius details amino acids 172 to 192 (21 residues), see Phobius details amino acids 221 to 244 (24 residues), see Phobius details amino acids 253 to 275 (23 residues), see Phobius details amino acids 286 to 303 (18 residues), see Phobius details amino acids 308 to 331 (24 residues), see Phobius details amino acids 350 to 356 (7 residues), see Phobius details amino acids 369 to 394 (26 residues), see Phobius details PF05977: MFS_3" amino acids 14 to 389 (376 residues), 117.6 bits, see alignment E=5.8e-38 PF07690: MFS_1" amino acids 19 to 354 (336 residues), 113.6 bits, see alignment E=1e-36

Best Hits

KEGG orthology group: None (inferred from 99% identity to pfs:PFLU5347)

Predicted SEED Role

"MFS general substrate transporter"

Sequence Analysis Tools

PaperBLAST (search for papers about homologs of this protein)

Search CDD (the Conserved Domains Database, which includes COG and superfam)

Compare to protein structures

Predict protein localization: PSORTb (Gram-negative bacteria)

Predict transmembrane helices and signal peptides: Phobius

Check the current SEED with FIGfam search

Find homologs in fast.genomics or the ENIGMA genome browser

See U1SAY3 at UniProt or InterPro

Protein Sequence (412 amino acids)

>PS417_24355 MFS transporter (Pseudomonas simiae WCS417)
MPSEPALLLRHHRPFIAFWLARIFTASGFQMLTVAIGWNLYQLTGNVLDLGLVGLVEFVP
RVLFMLHTGHVADRYERRKVAAICQTVQALIALSLAIGGLTGNVTREMIFILAFLLGAAR
SFEMPTTQAMLPSIVPSTLFPRAVASSQSAQQLATIVAPALGGLLYAFGSVWVYGPTVAL
YLIACVLTLNLPARQTPLNKGKATLDSLLAGIRFIRSRPDILGAISLDLFAVLLGGATAL
LPVFAKDILLTGAWGLGLLRSAPAVGALLMSLWLARFSVDRHVGRVMFTAVGVFGVATIA
FGLSTSFWFSLAVLVVLGAADMISMVIRASFVQLETPDEMRGRVSAVNGLFIGASNQLGE
FESGITAHWFGTVPAVVMGGIGTLVVTGVWIKLFPTLANRDRMHVPVEDAKV