Protein Info for GFF4740 in Xanthobacter sp. DMC5

Annotation: hypothetical protein

These analyses and tools can help you predict a protein's function, but be skeptical. For enzymes, over 10% of annotations from KEGG or SEED are probably incorrect. For other types of proteins, the error rates may be much higher. MetaCyc and Swiss-Prot have low error rates, but the best hits in these databases are often quite distant, so this protein's function may not be the same. TIGRFam has low error rates. Finally, many experimentally-characterized proteins are not in any of these databases. To find relevant papers, use PaperBLAST.

Protein Families and Features

1 50 100 150 200 250 300 350 400 450 500 550 600 650 700 750 800 850 922 transmembrane" amino acids 20 to 40 (21 residues), see Phobius details amino acids 52 to 73 (22 residues), see Phobius details amino acids 80 to 99 (20 residues), see Phobius details amino acids 105 to 126 (22 residues), see Phobius details amino acids 138 to 163 (26 residues), see Phobius details amino acids 169 to 187 (19 residues), see Phobius details amino acids 222 to 241 (20 residues), see Phobius details amino acids 254 to 272 (19 residues), see Phobius details amino acids 284 to 302 (19 residues), see Phobius details amino acids 322 to 344 (23 residues), see Phobius details amino acids 356 to 380 (25 residues), see Phobius details amino acids 387 to 407 (21 residues), see Phobius details amino acids 476 to 496 (21 residues), see Phobius details amino acids 512 to 530 (19 residues), see Phobius details amino acids 541 to 561 (21 residues), see Phobius details amino acids 568 to 591 (24 residues), see Phobius details amino acids 606 to 632 (27 residues), see Phobius details amino acids 652 to 675 (24 residues), see Phobius details amino acids 698 to 720 (23 residues), see Phobius details amino acids 731 to 751 (21 residues), see Phobius details amino acids 761 to 781 (21 residues), see Phobius details amino acids 787 to 811 (25 residues), see Phobius details amino acids 842 to 864 (23 residues), see Phobius details amino acids 876 to 896 (21 residues), see Phobius details PF07690: MFS_1" amino acids 20 to 304 (285 residues), 130.9 bits, see alignment E=2.7e-42 amino acids 247 to 618 (372 residues), 82.4 bits, see alignment E=1.5e-27 amino acids 510 to 860 (351 residues), 38.7 bits, see alignment E=2.9e-14 TIGR00886: nitrite transporter" amino acids 474 to 857 (384 residues), 321.6 bits, see alignment E=3.5e-100

Best Hits

KEGG orthology group: K02575, MFS transporter, NNP family, nitrate/nitrite transporter (inferred from 84% identity to azc:AZC_1424)

Predicted SEED Role

"Nitrate/nitrite transporter" in subsystem Nitrate and nitrite ammonification

Sequence Analysis Tools

PaperBLAST (search for papers about homologs of this protein)

Search CDD (the Conserved Domains Database, which includes COG and superfam)

Compare to protein structures

Predict protein localization: PSORTb (Gram-negative bacteria)

Predict transmembrane helices and signal peptides: Phobius

Check the current SEED with FIGfam search

Find homologs in fast.genomics or the ENIGMA genome browser

Find the best match in UniProt

Protein Sequence (922 amino acids)

>GFF4740 hypothetical protein (Xanthobacter sp. DMC5)
MHTPFEASQSDQRRALSMSTLAFTVCFAVWTIFSIIGIRIRQDLGLSDTEFGLLIGTPIL
TGSLIRVALGVWADVYGGRVVFALTMLAAAVATFLLTYAATYPQFLLAALGVGIAGGSFS
VGVAYVSRWYPAGKQGTALGIFGAGNVGAAVTKFLAPFVLVAFGWQMVAQVWAAALVVMA
VIFFVTTKDDPVLVERRRLGIKPKSAWLELEPLKNVQVWRFSLYYFFVFGAFVALALWLP
QYLVKVYGLDIKQAGMIAAAFSVPASLFRAYGGHLSDVYGARRVMYWTFLVSVAATFVLS
YPPTDYVVRGINGPITFHMEMGVAGFTVTVFVLGFFMALGKAAVYKHIPVYYPNNVGAVG
GLVGMIGGLGGFVLPLAFGVLNDLTGLWTSCFMLLFVIAVGALAWMHLAIRHMEKEASAP
ALASLPELPEMQGMPAPELPAPALPARKAGAVLTDWRPEDKAFWASTGRAIARRNLWLSI
PALLLSFAIWQVWSVVVAKLPLVGFRFTTDQLFWLAALPGLTGATLRIFYSFMVPIFGGR
LWTTLTTWSLIIPALGIGYAVQNPDTPYVVLLILALLCGFGGGNFASSMANISFFFPKAE
KGNALALNAGLGNLGVSVVQFVVPLVITMGLFGKFGGDPALVKAAAGPAPMWLQNAGFVF
VPFIVLSAFGAWFGMNDIADARASFREQSVIFQRKHNWIMCWLYTGTFGSFIGYSAGFPL
LTNILFPEVNALSYAFLGPLVGALARSGTGWLADRYGGGRVTLFVFVLMMAGVSGVLWAI
GMRAEPWAFSAFFAAFLLLFFATGVGNASTFQMIPAIMAKEMERLMPDADAEARRKQAEK
EAAAITGFTSAIAAFGAFFIPKGYGTSIALTGSPEAALWAFLGFYVSCLVITWAVYTRKG
GLLHDIERGIAPRATHRPAAAA