Protein Info for GFF4739 in Xanthobacter sp. DMC5
Annotation: Respiratory nitrate reductase 1 alpha chain
These analyses and tools can help you predict a protein's function, but be skeptical. For enzymes, over 10% of annotations from KEGG or SEED are probably incorrect. For other types of proteins, the error rates may be much higher. MetaCyc and Swiss-Prot have low error rates, but the best hits in these databases are often quite distant, so this protein's function may not be the same. TIGRFam has low error rates. Finally, many experimentally-characterized proteins are not in any of these databases. To find relevant papers, use PaperBLAST.
Protein Families and Features
Best Hits
Swiss-Prot: 70% identical to NARG_ECOLI: Respiratory nitrate reductase 1 alpha chain (narG) from Escherichia coli (strain K12)
KEGG orthology group: K00370, nitrate reductase 1, alpha subunit [EC: 1.7.99.4] (inferred from 85% identity to azc:AZC_1425)MetaCyc: 70% identical to nitrate reductase A subunit alpha (Escherichia coli K-12 substr. MG1655)
1.97.1.-; RXN0-3501 [EC: 1.7.5.1]; 1.7.5.1 [EC: 1.7.5.1]
Predicted SEED Role
"Respiratory nitrate reductase alpha chain (EC 1.7.99.4)" in subsystem Nitrate and nitrite ammonification (EC 1.7.99.4)
MetaCyc Pathways
- nitrate reduction III (dissimilatory) (2/2 steps found)
- nitrate reduction IX (dissimilatory) (2/2 steps found)
- NADH to nitrate electron transfer (1/2 steps found)
- nitrate reduction VIII (dissimilatory) (1/2 steps found)
- nitrate reduction VIIIb (dissimilatory) (1/2 steps found)
- nitrate reduction I (denitrification) (1/5 steps found)
- nitrate reduction VII (denitrification) (1/5 steps found)
KEGG Metabolic Maps
Isozymes
Compare fitness of predicted isozymes for: 1.7.99.4
Use Curated BLAST to search for 1.7.5.1 or 1.7.99.4
Sequence Analysis Tools
PaperBLAST (search for papers about homologs of this protein)
Search CDD (the Conserved Domains Database, which includes COG and superfam)
Compare to protein structures
Predict protein localization: PSORTb (Gram-negative bacteria)
Predict transmembrane helices and signal peptides: Phobius
Check the current SEED with FIGfam search
Find homologs in fast.genomics or the ENIGMA genome browser
Find the best match in UniProt
Protein Sequence (1247 amino acids)
>GFF4739 Respiratory nitrate reductase 1 alpha chain (Xanthobacter sp. DMC5) MSHFLDRLTFFRRETEPFSNGHGIVTHEDRSWEDGYRKRWQHDKIVRSTHGVNCTGSCSW KIYVKGGIVTWETQQTDYPRTRPDLPNHEPRGCARGASYSWYLYSGARVKHPMVRGRLLK LWREARAKLPPVAAWASIVENADKRASYTSIRGHGGLVRATWDEVNEIIAAANAHTIRKH GPDRVAGFSPIPAMSMVSYAAGARYLSLIGGVCLSFYDWYCDLPPASPQTWGEQTDVPES ADWYNAGFIIVWGSNVPQTRTPDAHFYTEVRYKGTKSAVVTPDYAEATKFADIWLNPKQG TDAALALAMGHVILREYHLDRQVPYFDDYLRRYSDMPFLVRLVEQEGRLVAERMLRASDL PGGLGETNNPEWKTVAFDEASGDLVVPVGSIGHRWGEQAKWNLEEKDGAGRALRLRLSLE DHADEIAAVDFPYFGGRATEHFVSTDHGEVLTRNLPVRLIQGADGSVMKVATVYDLMMAN YGLDRGFGGGNVAVSYDEDVPFTPAWAERITGVKRDAIITVAREFATNAEKTNGRSMIII GAAMNHWYHMDMNYRGVINLLVFCGAIGQSGGGWSHYVGQEKLRPQTGWQPLAFGLDWSR PPRHQNATSFWYAHTDQWRYETLTAGEILSPTAPKGEWDKSFIDYNVRAERMGWLPSAPQ LRQNPLAISAKAKTAGKEVKDYVASALKSGELELSCHDPDHPDNWPRNLFVWRSNLLGSS GKGHEYFLKHLLGTQHGVMGKDLGAEGAVRNTEVAWHEEAPTGKLDLLVTLDFRMSTTCV YSDIVLPTATWYEKNDLNTSDMHPFIHPLSAAVDPAWEARSDWDIYKGLARTFSAVAPEV LGVEEDTVLTPILHDTPAEIAQALDVKDWRNGEVEPIPGKTMPTVTVVERDYPATYARFT ALGPLMEKIGNGGKGISWKTGHEVEALKALNGTHRDGPAKGLAKIETDIDAAEVILMLAP ETNGEVAVKAWEALSKNTGREHAHLALPKEDEKIRFRDVQAQPRKIISSPTWSGIESEKV CYNAGYTNVHELIPWRTLTGRQQLYQDHLWMRAFGEELVTWKPPVDLKTITGHRGAKPNG NQEIVLNFLTPHQKWGIHSTYTDNLLMLTLNRGGPVIWISEDDARAAGLADNDWVEVFNA NGALTARAVVSQRVMPGMAMMYHAQEKIINTPGSEMTGKRGGIHNSVTRTVLKPTHMIGG YAQQSYGFNYYGTVGANRDEFVVVRKMNKVDWLEDELPAASEKEMAQ