Protein Info for GFF4738 in Hydrogenophaga sp. GW460-11-11-14-LB1

Annotation: Malonyl CoA-acyl carrier protein transacylase (EC 2.3.1.39)

These analyses and tools can help you predict a protein's function, but be skeptical. For enzymes, over 10% of annotations from KEGG or SEED are probably incorrect. For other types of proteins, the error rates may be much higher. MetaCyc and Swiss-Prot have low error rates, but the best hits in these databases are often quite distant, so this protein's function may not be the same. TIGRFam has low error rates. Finally, many experimentally-characterized proteins are not in any of these databases. To find relevant papers, use PaperBLAST.

Protein Families and Features

1 500 1000 1500 2000 2500 3000 3500 4225 transmembrane" amino acids 2823 to 2848 (26 residues), see Phobius details amino acids 3479 to 3497 (19 residues), see Phobius details PF00501: AMP-binding" amino acids 21 to 363 (343 residues), 207.6 bits, see alignment E=1.2e-64 amino acids 2639 to 2983 (345 residues), 297.2 bits, see alignment E=7.6e-92 TIGR01733: amino acid adenylation domain" amino acids 42 to 436 (395 residues), 329.8 bits, see alignment E=1.1e-102 amino acids 2659 to 3059 (401 residues), 431 bits, see alignment E=2e-133 PF13193: AMP-binding_C" amino acids 420 to 499 (80 residues), 34.5 bits, see alignment (E = 1.5e-11) amino acids 3043 to 3118 (76 residues), 34.4 bits, see alignment (E = 1.6e-11) PF00550: PP-binding" amino acids 524 to 586 (63 residues), 40.8 bits, see alignment (E = 9.8e-14) amino acids 1505 to 1571 (67 residues), 52.4 bits, see alignment (E = 2.4e-17) amino acids 3149 to 3212 (64 residues), 50.8 bits, see alignment (E = 7.4e-17) amino acids 4130 to 4192 (63 residues), 41.4 bits, see alignment (E = 6.5e-14) PF00109: ketoacyl-synt" amino acids 607 to 854 (248 residues), 224.2 bits, see alignment 9.5e-70 PF02801: Ketoacyl-synt_C" amino acids 862 to 980 (119 residues), 137.5 bits, see alignment (E = 9.9e-44) PF16197: KAsynt_C_assoc" amino acids 983 to 1084 (102 residues), 72.7 bits, see alignment (E = 1.4e-23) PF00698: Acyl_transf_1" amino acids 1123 to 1415 (293 residues), 184.3 bits, see alignment 1.9e-57 PF00202: Aminotran_3" amino acids 1755 to 2070 (316 residues), 168.7 bits, see alignment 7.8e-53 PF00668: Condensation" amino acids 2172 to 2593 (422 residues), 169 bits, see alignment E=7.4e-53 amino acids 3232 to 3676 (445 residues), 265.3 bits, see alignment E=4.3e-82

Best Hits

Predicted SEED Role

"Malonyl CoA-acyl carrier protein transacylase (EC 2.3.1.39)" in subsystem Fatty Acid Biosynthesis FASII or mycolic acid synthesis (EC 2.3.1.39)

MetaCyc Pathways

KEGG Metabolic Maps

Isozymes

Compare fitness of predicted isozymes for: 2.3.1.39

Use Curated BLAST to search for 2.3.1.39

Sequence Analysis Tools

PaperBLAST (search for papers about homologs of this protein)

Search CDD (the Conserved Domains Database, which includes COG and superfam)

Search structures

Predict protein localization: PSORTb (Gram-negative bacteria)

Predict transmembrane helices and signal peptides: Phobius

Check the current SEED with FIGfam search

Find homologs in fast.genomics or the ENIGMA genome browser

Find the best match in UniProt

Protein Sequence (4225 amino acids)

>GFF4738 Malonyl CoA-acyl carrier protein transacylase (EC 2.3.1.39) (Hydrogenophaga sp. GW460-11-11-14-LB1)
MHQKSQPSQDTGEHHLGRWLRSTAQSHADAVALESPDGEPLTYRELASAVFERAQAFAQA
GLQAGERIAVAATRSTDTVISILAAAEAGIAYVPLDLAYPAERLRAMLDDAQPRAVVGED
EALSTLRALVGELPTLAQPSPVQAPLHASASDLTYVLFTSGSTGRPKGVAMGAVPLDHLI
QWHADHPRLGQPARTLQFAPLSFDVHFQEIFSTLACGGTLVLVPEDQRRDPALLLNALIQ
RRIERIFVPYVALQMIAEASRDELPVALRDVVSAGEQLQVTPAIRSLFQRLPGSELHNHY
GPTESHVVTAHELRGDPAHWPEIPPIGRALPHVQLALVASENATDEHTGELLLGGETLAW
GYLGRPELTGERFRTDFPGLPGRWYVTGDLARRDADGVHTYLGRADQQLKVDGFRIEPGE
IELAIMAQAGIKDAVVTAPELPGIGKQLVAHLTLREGTPGDTSELITRIRAELRATMPEY
MVPVRYVVLERLPTTPSGKIDRKGLPLPAMETTAPASSDPVAIVRGLWQELLGLPSIGDD
QNLFDLGARSLLVMRFVTRLKDQGVKGLNVADVYDKPTVAGIAAALAGPVNAGQRKRLAP
AQPTAGIAIVGMATRTPGARRLDDFWQNLIDGREGIRQFSLDELDPSVPDAVRSRPNFVA
AHGVLDGVEHFDAGFFGISAREATMLDPQQRLMLELSVAALEHAAIDASRTDARIGVYAG
TGNNAYAPALRSEQPELVQQYGEFATMLASEKDYVATRVANRLNLNGPALSIHTACSTSL
VAVAQAWHALASGQCDVALAGGINVAVPQISGYLHVEGGMESADGHCRPFDADASGTVFA
SGGGVVVLRRLEDALAQGDTVYAVIRGVGLNNDGGDKASFTAPSVTGQMGAIRMALDQAG
VSARQIGYVEAHGTGTSLGDPIEVAALTRAWREDTADSQYCGIGSVKSNLGHMAAGAGVV
GLIKTALSLHHGVIPGTLHYRQPNPQIDFEHTPFRVVAQNTPWPRGGESRLAAVSSFGVG
GTNAHVVIEEAPARAPASSGDGRWLLPLSGRTADAALQRARDLADHLEHQPELALSEVAA
TLMRGRKPMAQRLSVVAGSVQEAIARLRAARSSVSALQKPRLVFLFPGQGSQHPGMARQL
VDEVPAFREALDRALPLAEAALGVDLRAWLVSADPADAEVAQLLAQTRYAQPALFSVSYA
LAAWLDSLGIRPDAMIGHSIGEYAAACHAGVFSLEDAMAAVIARGQAMFDQPAGAMLAVR
TGVDAVRALLPEGIEVAGCNAPALTVVAGAHEAIDRFAQALEKSEIDATRLRVSHAFHSA
SMEGALPRVTQALAQARLQAPRLTVYSCVSGAPLQAHEATDPGYWARQVRAPVLFSKAVM
AELAQGDTVFVEVGPGQALTALLRQHRTPKAEVPRIVSMLGAAQDPGQPAEQGLSALGAL
WCAGIEPAWPVAATARRAPLPTYPFQNDRHWFARRTAPAGALPSDVPFSVASAVTMSRIP
TVENELKRVLSDVSGIPADDMTTDASFVDLGLDSLSLTQATLELERVFGVKLRFRRLMED
LDNIGKLARFLDTEMPADKFAPAPTVAAPAAVAAAVPAQVASFAAPAAPLQAFAALPGGA
SAVHQLLQQQMQLMAQQLAVLAGQPMAAALPVASVPAAPAPTVAAPAPSAAPTEAEPAQP
SIKSLVEKPFGASPRLTLEARQDFTPAQRRWLDEFITRYNARSGKSKAFSQQHRKVMADP
RVVTGFNPLYKDLVYPIVVDRSSGANLWDLDGNEYIDLLSCFGGNLLGYQPPKVIEAMQQ
QLQLGLEVGPQHPYAADVAQLISEFTGMERVGFCNTGSEAVMGAMRIARTVTGRKTIAIF
TNSYHGIFDEVIVRGTKQLRSLSAAPGILANAVENILVLDWNSEDSLRVLRERGPELAAI
MTEPIQNKYPTLQPREFVQSLRQIADKAGCALIFDEVVTGFRVAPGGAQEFYGVRADIAT
YGKVIGGGLPFAAIAGNANWLDALDGGHWQYGDDSYPEAGVTYFAGTFVRHPLALAAARA
TLQHIKAGGREFYRNLNDRTQRLIDRLNTAFSVRGAPVKAVHCASLWRLQWDDNQKHISL
FYYLVRYHGLHLYEQFGHFVTEGMTDAHTDRIFQVFTDAMDELMGLGFITPKDGSPPPPS
GPQGGTRAGTDAQLSPGQTERWLAGGFDPSARLALNESFCVSLQGGVDRTALKAALDDVL
TRHEAFRIQFDLEEPRQRVAPQLNLPVAEIDLSAQPDADRALDDFCTQASLRDFPLDQAP
LAAVSLLTLADGRTVVHVVASHLVFDGWASSVFNAELATACKARSMGMAPAFKPAESPLD
FAEEEQARFDGPDGQEALRFWQQQLQNPPAPLNLGDRAPQGHRTYAADTLRIRLDGELFS
RLRAQAKQSGATLFQVLLMALTRMLHKRSGQSDFVVSIPYASQSLQRRGPIMADGVLDLP
LRLGCQPGEGTEAVLRRVRSRLMDALEYPLMTQGTVARALGIRSAGDRPPLTGIFFNLNP
KVDLSAYAPLQAAMHEGRKRGTLSELFFNFYEQNDALTLDLHHSSEFFSPQRAQELIDAL
RAEIAHFAQHPGVELPVLTAVVAPAPVRPATAPDARLIAWNQATAMPLEPHARVEQWISR
QAAATPDAVALVAHGVSLSYAALESRANRFGQLLRSRGIGAGMLVGVCLTRGPNLVPALL
GILKTGAAYVPLDPGFPKDRLHYMAEDAGVRLVITDVANASLSGVPREQQIRIDDDAAAI
ASASDSALPRPADWADDAPMYVIYTSGSTGKPKGVVLPQNAVCNFLASMRREPGLQAGDR
LLAVTTLSFDIAVLELFLPLTVGASVVLAQREDAMDGEVLARLAADQRINVMQATPTTWH
ILLDAGWRAPAGFRALCGGEPLPPSLAQRLLDAGVELWNMYGPTETTVWSTLCRITDAQQ
KITIGHPIANTQVWVLDEQLKPVAIGQEGELCIGGAGVAIGYFKRPELTAEKFVADPFDT
ATPGARIYRTGDLARWREDGTLEHLGRLDFQVKIRGYRIELGEIEARLAALPGIARTVVM
AREDSPGDVRLIGYAVPHAGQQPDAAALREALRAGLPDYMLPQQIVLLETMPLLPNGKID
RKALPAPTGPAPSANAGEVKAARNDTEKAVVEAMQAVLKLPAVGVDEDFFFLGGHSLLAA
KLMGQINKAFGLQLNLRVLFESTTAEKLARLIDQQRGDTAPAREPLLHRADQRQAPLTLM
QERIRFIEAMQPGRTVYNAPSAHRLHGPMDLQAFDRAFQEVVKRQPALHSAIVSTAQGPV
QVNVDLPSFSLLPLEDLGSYAPGEQEAVLQERLAVLADQAFELEHAPLYKARLFRLADDH
HVLFFMTHHVIWDGWSFDLLYDEMNALYQAFSEGRPSPLPPLALTYGDFADWHARWLDSD
ELQGQLAYWKNQFLGKPVQEPLTDLARLPGMLREGATESMHIEAEQADRVRDIAKRTGST
LSIVALSVYAVMVSQLLREPAPTIGLPVRGRPTPELDPIMGFFNNMLPVRLPVNTSLSWL
DWIGQVRAAVVEAFAHQDVPFERIAHALEAEQPGVHARLYQCMFSFQDARNRPTHWGPLA
HERVRIKHKGATEDLNLWLVEIPSGIEGGIQYDTHLYLPETAKALHERFAALLDAAARAP
HQTVAQLMAPSPAEQTRVLALDAPAAAPAQSLFDLLEQRATAASLPGLLRVGGTELDARE
LVRRVNEHADQLKTRLPTAGHPLTVAIAMQEPVAQLATALAVLRLGHRCLPLAPGDTPPA
DAVALGDAPWLQNQDDHMARKPAARPQAFDAALVAQISAGLARQAHLLVGDSLRASAHAP
GTALALLGLALHTGGRLVLWDQAPDGATLVADIQRERTGLVFADANTWADALQARRGASL
SVIAAVDARDNSPELVAQLLDAGLSVLNVLQTDALPLPLAVHWVADAAEAAVVGRPLVAQ
TVRVAEQPDRASPIGVAAPVWVKADPAGAWTDCHATARWRSDGALQHVDGTSDATALLGG
HLMDLEALEQAALALPGVEAAATQAVVETGGRRRLVIGLQAGALTASQREPHARALIDAV
PAEARAAVDVRWFEQIVRHPSGRLQLAQSRALKAQTSLASETFAGTPTEQAIHAVWSELL
GMSHIGRNDNFFDLGGTSLTAMQAVLKLEQQIGKQISPRRYVSETLAQLAAAYDATGAEA
PAPATPAAEPAPGLMKRLARLVQRA