Protein Info for GFF4731 in Xanthobacter sp. DMC5

Annotation: hypothetical protein

These analyses and tools can help you predict a protein's function, but be skeptical. For enzymes, over 10% of annotations from KEGG or SEED are probably incorrect. For other types of proteins, the error rates may be much higher. MetaCyc and Swiss-Prot have low error rates, but the best hits in these databases are often quite distant, so this protein's function may not be the same. TIGRFam has low error rates. Finally, many experimentally-characterized proteins are not in any of these databases. To find relevant papers, use PaperBLAST.

Protein Families and Features

1 50 100 150 200 250 300 350 392 transmembrane" amino acids 22 to 43 (22 residues), see Phobius details amino acids 63 to 81 (19 residues), see Phobius details amino acids 89 to 107 (19 residues), see Phobius details amino acids 113 to 134 (22 residues), see Phobius details amino acids 146 to 164 (19 residues), see Phobius details amino acids 177 to 198 (22 residues), see Phobius details amino acids 218 to 235 (18 residues), see Phobius details amino acids 241 to 258 (18 residues), see Phobius details amino acids 270 to 292 (23 residues), see Phobius details amino acids 301 to 320 (20 residues), see Phobius details amino acids 332 to 356 (25 residues), see Phobius details amino acids 364 to 386 (23 residues), see Phobius details PF05940: NnrS" amino acids 14 to 390 (377 residues), 370.6 bits, see alignment E=5.5e-115

Best Hits

KEGG orthology group: K07234, uncharacterized protein involved in response to NO (inferred from 62% identity to azc:AZC_1433)

Predicted SEED Role

"NnrS protein involved in response to NO" in subsystem Denitrification or Nitrosative stress or Oxidative stress

Sequence Analysis Tools

PaperBLAST (search for papers about homologs of this protein)

Search CDD (the Conserved Domains Database, which includes COG and superfam)

Compare to protein structures

Predict protein localization: PSORTb (Gram-negative bacteria)

Predict transmembrane helices and signal peptides: Phobius

Check the current SEED with FIGfam search

Find homologs in fast.genomics or the ENIGMA genome browser

Find the best match in UniProt

Protein Sequence (392 amino acids)

>GFF4731 hypothetical protein (Xanthobacter sp. DMC5)
MRTAATFRAFTGAPLLSRGFRPFFLGAGLFALVAIAVWPAVFLGEVILPTQFSAVEWHAH
EMLFGYGAAVIAGFLLTAIPNWTGRLPVAGKALGSLALLWFAGRAAVLVSTRIGWATAAV
IDVAFLVVFALVVAREIAAGKNWRNLKVIAVVGLLAGANLAFHLEAHFTGDADHAGRAAL
ALIVFLILLFGGRVVPSFTGNWLARRGEAKRPAPFDRWDAYALALSALALVAWIAFPDKG
LTGLALLAAGLASLARLARWRGWRTFADPLVLVLHGAFLLVALGFLAAGASALMPDQVPP
AIGLHIWGIGGIGGMTLAMMTRATLGHSGQALAATPGTVAVYLLVAAALMARIAMALLPE
WTAPLMLVAAFCWCAAFAGFVIIYWPMLARRG