Protein Info for GFF4717 in Xanthobacter sp. DMC5

Annotation: putative transport protein HsrA

These analyses and tools can help you predict a protein's function, but be skeptical. For enzymes, over 10% of annotations from KEGG or SEED are probably incorrect. For other types of proteins, the error rates may be much higher. MetaCyc and Swiss-Prot have low error rates, but the best hits in these databases are often quite distant, so this protein's function may not be the same. TIGRFam has low error rates. Finally, many experimentally-characterized proteins are not in any of these databases. To find relevant papers, use PaperBLAST.

Protein Families and Features

1 50 100 150 200 250 300 350 400 450 479 signal peptide" amino acids 1 to 32 (32 residues), see Phobius details transmembrane" amino acids 48 to 70 (23 residues), see Phobius details amino acids 78 to 97 (20 residues), see Phobius details amino acids 104 to 124 (21 residues), see Phobius details amino acids 136 to 158 (23 residues), see Phobius details amino acids 165 to 186 (22 residues), see Phobius details amino acids 199 to 219 (21 residues), see Phobius details amino acids 225 to 245 (21 residues), see Phobius details amino acids 266 to 287 (22 residues), see Phobius details amino acids 298 to 320 (23 residues), see Phobius details amino acids 332 to 350 (19 residues), see Phobius details amino acids 357 to 381 (25 residues), see Phobius details amino acids 395 to 415 (21 residues), see Phobius details amino acids 435 to 454 (20 residues), see Phobius details PF07690: MFS_1" amino acids 17 to 285 (269 residues), 115.8 bits, see alignment E=1.1e-37 amino acids 272 to 463 (192 residues), 52.2 bits, see alignment E=2.3e-18

Best Hits

KEGG orthology group: None (inferred from 85% identity to xau:Xaut_0838)

Predicted SEED Role

"putative multidrug efflux protein"

Sequence Analysis Tools

PaperBLAST (search for papers about homologs of this protein)

Search CDD (the Conserved Domains Database, which includes COG and superfam)

Compare to protein structures

Predict protein localization: PSORTb (Gram-negative bacteria)

Predict transmembrane helices and signal peptides: Phobius

Check the current SEED with FIGfam search

Find homologs in fast.genomics or the ENIGMA genome browser

Find the best match in UniProt

Protein Sequence (479 amino acids)

>GFF4717 putative transport protein HsrA (Xanthobacter sp. DMC5)
MQLKALPPQVLIPLIVACALFMEQVDSTVIATSLPAIAADLGEDPVALKLALTSYLLSLA
VFIPASGWAADRYGARTVFRSAIVIFTIGSILCGLSSSLADFVLYRIIQGMGGAMMVPVG
RLVILRSVPKSELVSSLAWLTIPALLGPVFGPPLGGFITTYFDWRLIFFINVPIGVLGVF
LATRFIENVREEDVPPLDLKGLILSGAGLAGLVFGFAVLGQEVLVPQWAAVAIGATGAFF
LFLYVRHARVTPHAVLDLKLLRHGTFRAGVVGGSLFRVGIGAMPFLLPLMLQLSFGLSPF
ASGLLTFTASAGAMAMKFTAARLLRRIGYKRVLLANVFLCSGFIAINATFTPLTPHWLIA
SLLLVGGFLRSLQFTALNALSYADVEPAEMSRATSFASVAQQVSLSFGVAVAGLVLETMR
ASRGEVAVTQGDFSAAFLVVAAVSALSIFFFIPLPKDAGSSLTARKPDLDDPRSEVPPD