Protein Info for GFF4705 in Variovorax sp. SCN45

Annotation: Monooxygenase, flavin-binding family

These analyses and tools can help you predict a protein's function, but be skeptical. For enzymes, over 10% of annotations from KEGG or SEED are probably incorrect. For other types of proteins, the error rates may be much higher. MetaCyc and Swiss-Prot have low error rates, but the best hits in these databases are often quite distant, so this protein's function may not be the same. TIGRFam has low error rates. Finally, many experimentally-characterized proteins are not in any of these databases. To find relevant papers, use PaperBLAST.

Protein Families and Features

1 50 100 150 200 250 300 350 400 442 PF07992: Pyr_redox_2" amino acids 10 to 210 (201 residues), 42.6 bits, see alignment E=1.6e-14 PF00743: FMO-like" amino acids 10 to 384 (375 residues), 190.4 bits, see alignment E=1.5e-59 PF13738: Pyr_redox_3" amino acids 13 to 214 (202 residues), 62.6 bits, see alignment E=1.2e-20 PF13450: NAD_binding_8" amino acids 14 to 62 (49 residues), 23.1 bits, see alignment 2.3e-08 PF13434: Lys_Orn_oxgnase" amino acids 51 to 211 (161 residues), 45.7 bits, see alignment E=1.5e-15

Best Hits

KEGG orthology group: None (inferred from 93% identity to vpe:Varpa_4064)

Predicted SEED Role

"Monooxygenase, flavin-binding family"

Sequence Analysis Tools

PaperBLAST (search for papers about homologs of this protein)

Search CDD (the Conserved Domains Database, which includes COG and superfam)

Compare to protein structures

Predict protein localization: PSORTb (Gram-negative bacteria)

Predict transmembrane helices and signal peptides: Phobius

Check the current SEED with FIGfam search

Find homologs in fast.genomics or the ENIGMA genome browser

Find the best match in UniProt

Protein Sequence (442 amino acids)

>GFF4705 Monooxygenase, flavin-binding family (Variovorax sp. SCN45)
MSSTVPTHEQIALIGAGPSGLAGARNLHKHGVPFQGFEAHSDVGGLWDIDNPRSTVYHSA
HLISSKRTTEFAEFPMADTVADYPSHRELRRYFSDFADRFGLRDHFRFNTRVLRVEPVSD
APDTLWRVSVEAGDGTVETAEYKGVVIANGTLAEPKRPGFEGRFDGELLHTSDYKHPELF
KGKRVLIVGAGNSGCDIAVDAVHYAKSVDISVRRGYYFVPKYVFGKPADTLGGKRPLPPW
LKQKIDATVLKWFTGDPVRFGFPKPDYKMYESHPIVNSLVLHHVGHGDIGVRGDIARLDG
HTVHFKDGSARDYDLILAATGYALHYPFIDRELLNWQGMAPRLYLNIFSPRFENIAVLGM
IEASGIGWQGRYEQAELVARYFRAKAAGSPKAQALRAAVQGPPPDLSGGFRYLQLERMAY
YVHKDTYRAAVRNAAAALADPA