Protein Info for GFF4702 in Xanthobacter sp. DMC5

Annotation: putative protein

These analyses and tools can help you predict a protein's function, but be skeptical. For enzymes, over 10% of annotations from KEGG or SEED are probably incorrect. For other types of proteins, the error rates may be much higher. MetaCyc and Swiss-Prot have low error rates, but the best hits in these databases are often quite distant, so this protein's function may not be the same. TIGRFam has low error rates. Finally, many experimentally-characterized proteins are not in any of these databases. To find relevant papers, use PaperBLAST.

Protein Families and Features

1 50 100 150 200 250 300 350 400 450 500 538 PF01636: APH" amino acids 139 to 285 (147 residues), 39.9 bits, see alignment E=8.8e-14 PF06414: Zeta_toxin" amino acids 363 to 472 (110 residues), 29.5 bits, see alignment E=9.6e-11 PF13671: AAA_33" amino acids 370 to 512 (143 residues), 101.3 bits, see alignment E=1.2e-32

Best Hits

Predicted SEED Role

No annotation

Sequence Analysis Tools

PaperBLAST (search for papers about homologs of this protein)

Search CDD (the Conserved Domains Database, which includes COG and superfam)

Compare to protein structures

Predict protein localization: PSORTb (Gram-negative bacteria)

Predict transmembrane helices and signal peptides: Phobius

Check the current SEED with FIGfam search

Find homologs in fast.genomics or the ENIGMA genome browser

Find the best match in UniProt

Protein Sequence (538 amino acids)

>GFF4702 putative protein (Xanthobacter sp. DMC5)
MAATVQPPQKTAGDHVVADQGAVFALLADPATHGLAEKIVRIDTHGAAVFLAGPFAYKVK
RAVFFPFMDFSTLEKRRAACAAEVEISGPGAPGLYLGVVPIVRTAHGLALGGDGEAVDYA
VKMRRFDTDLTLDRIAERGALTPDLVKAVAAMVVSAHATAPERRGFDTAGALSTYLEDNI
AEFSTRPDLFPPDDVARLAETSRAALQRVRPLLAARSQAGFVRRCHGDMHLRNIVLLDGK
PVLFDAIEFNDAIATCDALYDLAFLLMDLWQRGLRDEANAIFNRYLWASDDAHIEGLSAL
PLFLSLRAGIRAKVEAAGLAHLKGGERTEAEGRVAHFFRETLALLGGARPKQSQFGNVIQ
QVADPSAPLLWAVGGLSGSGKSSWAARMAAGLGTRAPGAVIVRSDIERKRLFKVAETEKL
PPEAYAAEVSPRVYERLRTLARRVLASGYTVIVDAVHARPEERDAIQQVARDAAVPFAGI
WLHVPAEELVRRVTARTGDASDADASVVRQQLGYDLGKIRWIRSERPVSTSPAAPASD