Protein Info for GFF470 in Xanthobacter sp. DMC5

Annotation: High-affinity branched-chain amino acid transport system permease protein LivH

These analyses and tools can help you predict a protein's function, but be skeptical. For enzymes, over 10% of annotations from KEGG or SEED are probably incorrect. For other types of proteins, the error rates may be much higher. MetaCyc and Swiss-Prot have low error rates, but the best hits in these databases are often quite distant, so this protein's function may not be the same. TIGRFam has low error rates. Finally, many experimentally-characterized proteins are not in any of these databases. To find relevant papers, use PaperBLAST.

Protein Families and Features

1 50 100 150 200 250 293 signal peptide" amino acids 1 to 20 (20 residues), see Phobius details transmembrane" amino acids 21 to 28 (8 residues), see Phobius details amino acids 49 to 80 (32 residues), see Phobius details amino acids 94 to 116 (23 residues), see Phobius details amino acids 142 to 161 (20 residues), see Phobius details amino acids 182 to 209 (28 residues), see Phobius details amino acids 229 to 255 (27 residues), see Phobius details amino acids 267 to 285 (19 residues), see Phobius details PF02653: BPD_transp_2" amino acids 12 to 277 (266 residues), 116.1 bits, see alignment E=8.3e-38

Best Hits

KEGG orthology group: K01997, branched-chain amino acid transport system permease protein (inferred from 47% identity to dma:DMR_11380)

Predicted SEED Role

"High-affinity branched-chain amino acid transport system permease protein LivH (TC 3.A.1.4.1)" in subsystem ABC transporter branched-chain amino acid (TC 3.A.1.4.1) (TC 3.A.1.4.1)

Sequence Analysis Tools

PaperBLAST (search for papers about homologs of this protein)

Search CDD (the Conserved Domains Database, which includes COG and superfam)

Compare to protein structures

Predict protein localization: PSORTb (Gram-negative bacteria)

Predict transmembrane helices and signal peptides: Phobius

Check the current SEED with FIGfam search

Find homologs in fast.genomics or the ENIGMA genome browser

Find the best match in UniProt

Protein Sequence (293 amino acids)

>GFF470 High-affinity branched-chain amino acid transport system permease protein LivH (Xanthobacter sp. DMC5)
MQTVTALLQVLSAGIGTGAVYALVALGFNVVFKSTGAMNFAQGEWVVMGGMVTALLIGTF
SGTGLAVVTAVVLVGIIGLLSERLTVQPLKRPDALVITLVTIGLSIVTRSLVMLVLGKKP
VGYAGFSGNTALSFGGVSIQSQTLWIIAITLAFLVVMHAFFERTILGKALRAAAADREAA
AIVGVNVGSTVLLSFGIAALAGALAGAIVTPLTLASYDQGAMFGFKGFSAAMLGGLGSLP
GAVVGGLALGLLEAFGSFYISSDFKDAIAFAVLLLILFVRPSGLLGRADIVKV