Protein Info for GFF4696 in Variovorax sp. SCN45

Annotation: UPF0307 protein YjgA

These analyses and tools can help you predict a protein's function, but be skeptical. For enzymes, over 10% of annotations from KEGG or SEED are probably incorrect. For other types of proteins, the error rates may be much higher. MetaCyc and Swiss-Prot have low error rates, but the best hits in these databases are often quite distant, so this protein's function may not be the same. TIGRFam has low error rates. Finally, many experimentally-characterized proteins are not in any of these databases. To find relevant papers, use PaperBLAST.

Protein Families and Features

1 50 100 150 218 PF04751: DarP" amino acids 36 to 194 (159 residues), 169.7 bits, see alignment E=2.1e-54

Best Hits

Swiss-Prot: 42% identical to Y2853_BURCJ: UPF0307 protein BceJ2315_28530 (BceJ2315_28530) from Burkholderia cenocepacia (strain ATCC BAA-245 / DSM 16553 / LMG 16656 / NCTC 13227 / J2315 / CF5610)

KEGG orthology group: K09889, ribosome-associated protein (inferred from 94% identity to vap:Vapar_3553)

Predicted SEED Role

"FIG138315: Putative alpha helix protein" in subsystem Putative TldE-TldD proteolytic complex

Sequence Analysis Tools

PaperBLAST (search for papers about homologs of this protein)

Search CDD (the Conserved Domains Database, which includes COG and superfam)

Compare to protein structures

Predict protein localization: PSORTb (Gram-negative bacteria)

Predict transmembrane helices and signal peptides: Phobius

Check the current SEED with FIGfam search

Find homologs in fast.genomics or the ENIGMA genome browser

Find the best match in UniProt

Protein Sequence (218 amino acids)

>GFF4696 UPF0307 protein YjgA (Variovorax sp. SCN45)
MSRKPKKGYFVRGQFVAEGSELDLELKRELKGTDDASRTDLKRESDELQKLGGELLTLRA
GLFDALQLDEKLVDAIAEAKRITNFEGKRRQMQFIGKLMRKLEPEVLEAVRQALSEQASV
PAAETAALHEAERWRDRLIADDDALGGWIETHPATDSQQLRALVRQARKDMKTGPAGEAP
RQGKAYREIFQLVRAQLAVHGGDDHAAAAAAQDREEDA