Protein Info for PS417_23980 in Pseudomonas simiae WCS417

Annotation: ribosome maturation protein RimP

These analyses and tools can help you predict a protein's function, but be skeptical. For enzymes, over 10% of annotations from KEGG or SEED are probably incorrect. For other types of proteins, the error rates may be much higher. MetaCyc and Swiss-Prot have low error rates, but the best hits in these databases are often quite distant, so this protein's function may not be the same. TIGRFam has low error rates. Finally, many experimentally-characterized proteins are not in any of these databases. To find relevant papers, use PaperBLAST.

Protein Families and Features

1 50 100 152 signal peptide" amino acids 1 to 26 (26 residues), see Phobius details PF02576: RimP_N" amino acids 11 to 83 (73 residues), 108 bits, see alignment E=2.5e-35 PF17384: DUF150_C" amino acids 86 to 151 (66 residues), 67.1 bits, see alignment E=1.3e-22

Best Hits

Swiss-Prot: 99% identical to RIMP_PSEFS: Ribosome maturation factor RimP (rimP) from Pseudomonas fluorescens (strain SBW25)

KEGG orthology group: K09748, ribosome maturation factor RimP (inferred from 99% identity to pfs:PFLU5255)

Predicted SEED Role

"FIG000325: clustered with transcription termination protein NusA"

Sequence Analysis Tools

PaperBLAST (search for papers about homologs of this protein)

Search CDD (the Conserved Domains Database, which includes COG and superfam)

Compare to protein structures

Predict protein localization: PSORTb (Gram-negative bacteria)

Predict transmembrane helices and signal peptides: Phobius

Check the current SEED with FIGfam search

Find homologs in fast.genomics or the ENIGMA genome browser

See A0A1N7U6Q1 at UniProt or InterPro

Protein Sequence (152 amino acids)

>PS417_23980 ribosome maturation protein RimP (Pseudomonas simiae WCS417)
MSSKLEELQALLAPVVVALGYECWGIEFSAQGRHSMLRVYIDKEGGVLVDDCAIVSRQIS
GVLDVEDPISVEYTLEVSSPGMERPLFTIDQFAKFAGEQVKIKLRSPFEGRRNFQGLLRG
VEEQDVVVQVEDHEFLLPIDMIDKANIIPSFD