Protein Info for GFF4679 in Salmonella enterica subsp. enterica serovar Typhimurium str. MS1868

Annotation: Phage tail assembly

These analyses and tools can help you predict a protein's function, but be skeptical. For enzymes, over 10% of annotations from KEGG or SEED are probably incorrect. For other types of proteins, the error rates may be much higher. MetaCyc and Swiss-Prot have low error rates, but the best hits in these databases are often quite distant, so this protein's function may not be the same. TIGRFam has low error rates. Finally, many experimentally-characterized proteins are not in any of these databases. To find relevant papers, use PaperBLAST.

Protein Families and Features

1 50 100 150 200 249 PF16461: Phage_TTP_12" amino acids 21 to 155 (135 residues), 206.9 bits, see alignment E=8.6e-66 PF02368: Big_2" amino acids 165 to 242 (78 residues), 43.5 bits, see alignment E=2.5e-15

Best Hits

Swiss-Prot: 56% identical to TUBE_LAMBD: Tail tube protein (V) from Escherichia phage lambda

KEGG orthology group: None (inferred from 99% identity to seg:SG1218)

Predicted SEED Role

No annotation

Sequence Analysis Tools

PaperBLAST (search for papers about homologs of this protein)

Search CDD (the Conserved Domains Database, which includes COG and superfam)

Search structures

Predict protein localization: PSORTb (Gram-negative bacteria)

Predict transmembrane helices and signal peptides: Phobius

Check the current SEED with FIGfam search

Find homologs in fast.genomics or the ENIGMA genome browser

Find the best match in UniProt

Protein Sequence (249 amino acids)

>GFF4679 Phage tail assembly (Salmonella enterica subsp. enterica serovar Typhimurium str. MS1868)
MTDTTIPNPLAPVKGANTTFWMYNSEGDPFASPLSDNNWLRLANVKDLQPGELTADAEDN
NYLDDENADWKSTTQGQKSAGDTSVTLAWKPGEDVQKKLIQLFTTGQKRGFRIKYPNGTV
DVFRGWVSSLGKTVQSKDEIARTVKITSVGRPYMAEEDAPEVVSVTGLTVEPTNATVKVG
ATTAVTFTVKPDNVTDKSLRIATSDPTTATVTQAENIATVKGVKAGTVKIIGMTTDGNFT
AIADITVQA