Protein Info for GFF4666 in Xanthobacter sp. DMC5

Annotation: Aldose sugar dehydrogenase YliI

These analyses and tools can help you predict a protein's function, but be skeptical. For enzymes, over 10% of annotations from KEGG or SEED are probably incorrect. For other types of proteins, the error rates may be much higher. MetaCyc and Swiss-Prot have low error rates, but the best hits in these databases are often quite distant, so this protein's function may not be the same. TIGRFam has low error rates. Finally, many experimentally-characterized proteins are not in any of these databases. To find relevant papers, use PaperBLAST.

Protein Families and Features

1 50 100 150 200 250 300 350 412 transmembrane" amino acids 39 to 59 (21 residues), see Phobius details PF07995: GSDH" amino acids 80 to 406 (327 residues), 469.2 bits, see alignment E=4e-145

Best Hits

Swiss-Prot: 52% identical to YLII_ECOLI: Aldose sugar dehydrogenase YliI (yliI) from Escherichia coli (strain K12)

KEGG orthology group: None (inferred from 79% identity to xau:Xaut_2740)

MetaCyc: 52% identical to aldose sugar dehydrogenase YliI (Escherichia coli K-12 substr. MG1655)
1.1.5.-

Predicted SEED Role

"PQQ-dependent oxidoreductase, gdhB family"

Sequence Analysis Tools

PaperBLAST (search for papers about homologs of this protein)

Search CDD (the Conserved Domains Database, which includes COG and superfam)

Compare to protein structures

Predict protein localization: PSORTb (Gram-negative bacteria)

Predict transmembrane helices and signal peptides: Phobius

Check the current SEED with FIGfam search

Find homologs in fast.genomics or the ENIGMA genome browser

Find the best match in UniProt

Protein Sequence (412 amino acids)

>GFF4666 Aldose sugar dehydrogenase YliI (Xanthobacter sp. DMC5)
VRDRVDPAARHTPTPLNAVLPEAQLAAGPRTKRRRGTGGAALGAILILILIAAATYAFAQ
PVEARLGGEQVRVVPFATGLDTPWSIAFLPDGRLLVTERDGRLRPIDATGKVGAPISGVP
KVAARGQGGLLDVVLDPKFAQNRLIYLSYAEPRPEGAATAVARGRLSEDLTRLTDLDVIF
RQQPAVSGGNHFGSRLVFAPDGMLFVTLGERFNHMDKAQDLSTTLGKVVRIAPDGSIPAD
NPFVERVGARPEIWSFGHRNVQAAAIEPGTGALWTVEHGPRGGDEVNRPEAGENYGWPVI
GYGRHYSGAQIGVGTAKEGMEQPLFYWDPSIAPSGAAFYTGDALPGWRGQLFVGALAGQA
LVMVKVRDGAVIGEERLPLGKRIRDVRMGPDGALWLAAESTGEILRVVPAGR