Protein Info for GFF4655 in Sphingobium sp. HT1-2

Annotation: hypothetical protein

These analyses and tools can help you predict a protein's function, but be skeptical. For enzymes, over 10% of annotations from KEGG or SEED are probably incorrect. For other types of proteins, the error rates may be much higher. MetaCyc and Swiss-Prot have low error rates, but the best hits in these databases are often quite distant, so this protein's function may not be the same. TIGRFam has low error rates. Finally, many experimentally-characterized proteins are not in any of these databases. To find relevant papers, use PaperBLAST.

Protein Families and Features

1 50 100 150 200 250 300 350 400 450 500 550 600 650 700 750 800 850 905 TIGR02606: putative addiction module antidote protein, CC2985 family" amino acids 7 to 47 (41 residues), 47.3 bits, see alignment (E = 1.7e-16) PF03693: ParD_antitoxin" amino acids 9 to 46 (38 residues), 28.8 bits, see alignment (E = 4.1e-10) TIGR00229: PAS domain S-box protein" amino acids 213 to 336 (124 residues), 35.2 bits, see alignment E=1.2e-12 PF00989: PAS" amino acids 218 to 323 (106 residues), 28.2 bits, see alignment E=5e-10 PF08448: PAS_4" amino acids 223 to 331 (109 residues), 62 bits, see alignment E=1.8e-20 PF02518: HATPase_c" amino acids 491 to 611 (121 residues), 73.6 bits, see alignment E=5.2e-24 PF00072: Response_reg" amino acids 634 to 744 (111 residues), 46.4 bits, see alignment E=1.3e-15 amino acids 779 to 883 (105 residues), 52 bits, see alignment E=2.2e-17

Best Hits

Predicted SEED Role

"FOG: PAS/PAC domain"

Sequence Analysis Tools

PaperBLAST (search for papers about homologs of this protein)

Search CDD (the Conserved Domains Database, which includes COG and superfam)

Compare to protein structures

Predict protein localization: PSORTb (Gram-negative bacteria)

Predict transmembrane helices and signal peptides: Phobius

Check the current SEED with FIGfam search

Find homologs in fast.genomics or the ENIGMA genome browser

Find the best match in UniProt

Protein Sequence (905 amino acids)

>GFF4655 hypothetical protein (Sphingobium sp. HT1-2)
MPNRLSRNVSLTAELDRFIEARLEAGEYGNASEVVRTALKLLREREDVASTDPFWWLKGR
GESIDLMRRVDWASTQLGTPSRWSAQLRATVNNVLNSPVPKVLMWGPEHVMIYNDGYVAI
AGDYHPKAMGGTVPGIWPEIWDFNRQILASGFGGEVVSHLDQPMILNRYGTPEEVIFDLF
YTPIYDEDGKVGGVMCTVIENTEKVEAQRALAKSESELRIITDSLPVLISYVDADHVYRF
ANSFYEDWVGKPPSEVIGRHVRDVVGEKTYVARLPLIERAMAGEWVVADTTMPHRSGEDR
AAEVRYIPRIEADGSVAGFHVLVFDIEDRVRREAALERQVQHRERAEEQLRHLNETLETR
VVEEMAERRQAEAILAQSQKMETIGQLTGGVAHDFNNLLQVVSGNLQLLARDIAGNEKAE
TRVANAMAGVTRGAKLAAQLLAFGRRQALEPKVVNVTRFVRDMDDMLRRAIGEGIEVETI
VGGGLWNTFVDPAQVENALLNLAINARDAMEGQGKLTIELGNASLDDEYARSHSEVAPGQ
YVMLAVTDTGSGIPPEIIEKVFDPFFSTKSEGKGSGLGLSMVYGFVKQSGGHVKIYSEVG
EGTTIKLYFPRSVENEDLEVELDSGPIRGGSETVLVVEDDDAVRATVVEMLNDLGYGVLK
AVDASSALSVIESGIQIDMLFTDVVMPGRLKSAELARMARERQPDIAVLFTSGYTENSIV
HGGRLDAGVELLSKPYSRDALARKFRHVLANQRQRNLARTMSARSAPDDKPERRNALALI
VEDDAIILANTAELVKDLGLTVIEALSAEDAVSALQTTHVDVLITDANLPGMTGPDLAAI
ARQMLPHIGIIFATGDTQLDYDRSAPKTVLLAKPYDGKALSQAIAEVGIDPISVHIRTSK
SSSSD