Protein Info for GFF4644 in Sphingobium sp. HT1-2

Annotation: Oxidoreductase, short-chain dehydrogenase/reductase family

These analyses and tools can help you predict a protein's function, but be skeptical. For enzymes, over 10% of annotations from KEGG or SEED are probably incorrect. For other types of proteins, the error rates may be much higher. MetaCyc and Swiss-Prot have low error rates, but the best hits in these databases are often quite distant, so this protein's function may not be the same. TIGRFam has low error rates. Finally, many experimentally-characterized proteins are not in any of these databases. To find relevant papers, use PaperBLAST.

Protein Families and Features

1 50 100 150 200 258 PF00106: adh_short" amino acids 2 to 192 (191 residues), 157.1 bits, see alignment E=8e-50 PF23441: SDR" amino acids 4 to 238 (235 residues), 27.8 bits, see alignment E=3.3e-10 PF08659: KR" amino acids 5 to 161 (157 residues), 37.6 bits, see alignment E=4.6e-13 PF13561: adh_short_C2" amino acids 8 to 240 (233 residues), 196.3 bits, see alignment E=1.2e-61

Best Hits

KEGG orthology group: None (inferred from 68% identity to mav:MAV_5213)

Predicted SEED Role

"Oxidoreductase, short-chain dehydrogenase/reductase family"

Sequence Analysis Tools

PaperBLAST (search for papers about homologs of this protein)

Search CDD (the Conserved Domains Database, which includes COG and superfam)

Compare to protein structures

Predict protein localization: PSORTb (Gram-negative bacteria)

Predict transmembrane helices and signal peptides: Phobius

Check the current SEED with FIGfam search

Find homologs in fast.genomics or the ENIGMA genome browser

Find the best match in UniProt

Protein Sequence (258 amino acids)

>GFF4644 Oxidoreductase, short-chain dehydrogenase/reductase family (Sphingobium sp. HT1-2)
MQVAIITGAGSGIGLCTAKMLHDAGMAIVGVGRDPAKLATLESEIGDPARVATLSIDVTQ
DDAPARIVQLALDRFGRIDFLVNNAGAGSPKPLHETDDATLDGFLDLMLRAPFRLAREAI
VHMGEGCGIVNVTSTYAVIGGRRGGAYSAAKGGLDALTKHIACDYGPQGIRANCVAPGVT
MTDMVRHRFEDEMFKRVNVETTPFPRLGEVEDVASTIAFLCSPGAAFINGQTIVVDGGWT
STKYLSPRALTTTWVEAE