Protein Info for GFF4643 in Xanthobacter sp. DMC5

Annotation: hypothetical protein

These analyses and tools can help you predict a protein's function, but be skeptical. For enzymes, over 10% of annotations from KEGG or SEED are probably incorrect. For other types of proteins, the error rates may be much higher. MetaCyc and Swiss-Prot have low error rates, but the best hits in these databases are often quite distant, so this protein's function may not be the same. TIGRFam has low error rates. Finally, many experimentally-characterized proteins are not in any of these databases. To find relevant papers, use PaperBLAST.

Protein Families and Features

1 50 100 150 200 240 transmembrane" amino acids 6 to 30 (25 residues), see Phobius details amino acids 42 to 66 (25 residues), see Phobius details amino acids 72 to 91 (20 residues), see Phobius details amino acids 115 to 135 (21 residues), see Phobius details amino acids 158 to 179 (22 residues), see Phobius details amino acids 199 to 217 (19 residues), see Phobius details PF02683: DsbD_TM" amino acids 6 to 211 (206 residues), 31.5 bits, see alignment E=1.1e-11 PF13386: DsbD_2" amino acids 9 to 204 (196 residues), 39.5 bits, see alignment E=5.9e-14

Best Hits

KEGG orthology group: None (inferred from 76% identity to xau:Xaut_2721)

Predicted SEED Role

"Cytochrome c-type biogenesis protein CcdA (DsbD analog)" in subsystem Biogenesis of c-type cytochromes or Experimental tye or Periplasmic disulfide interchange or Sulfur oxidation

Sequence Analysis Tools

PaperBLAST (search for papers about homologs of this protein)

Search CDD (the Conserved Domains Database, which includes COG and superfam)

Compare to protein structures

Predict protein localization: PSORTb (Gram-negative bacteria)

Predict transmembrane helices and signal peptides: Phobius

Check the current SEED with FIGfam search

Find homologs in fast.genomics or the ENIGMA genome browser

Find the best match in UniProt

Protein Sequence (240 amino acids)

>GFF4643 hypothetical protein (Xanthobacter sp. DMC5)
MALGSLGLAFLAGVLSILSPCVVPLLPLVLGPAAAEHRLAPLALAVGVTLSFTVIGLFVA
TVGYAIGLEGDAFRMVGAVLMIGIGAVLAVPPLQTRLATAGGPVSDLASRHLSGFATEGV
GGQFAVGLLLGAVWSPCVGPTLGAASVLAAQGRNLGEVAAVMGLFGLGAGLPLALAGTLS
RPTLMRWRSRMISGGKGAKALMGLVLVVVGLLIATGADKRIEAALVQVSPAWLTTLTTRF