Protein Info for GFF4642 in Variovorax sp. SCN45

Annotation: no description

These analyses and tools can help you predict a protein's function, but be skeptical. For enzymes, over 10% of annotations from KEGG or SEED are probably incorrect. For other types of proteins, the error rates may be much higher. MetaCyc and Swiss-Prot have low error rates, but the best hits in these databases are often quite distant, so this protein's function may not be the same. TIGRFam has low error rates. Finally, many experimentally-characterized proteins are not in any of these databases. To find relevant papers, use PaperBLAST.

Protein Families and Features

1 50 100 136 transmembrane" amino acids 13 to 34 (22 residues), see Phobius details amino acids 40 to 63 (24 residues), see Phobius details amino acids 75 to 96 (22 residues), see Phobius details amino acids 105 to 126 (22 residues), see Phobius details PF04138: GtrA_DPMS_TM" amino acids 12 to 126 (115 residues), 66 bits, see alignment E=1.9e-22

Best Hits

Predicted SEED Role

No annotation

Sequence Analysis Tools

PaperBLAST (search for papers about homologs of this protein)

Search CDD (the Conserved Domains Database, which includes COG and superfam)

Compare to protein structures

Predict protein localization: PSORTb (Gram-negative bacteria)

Predict transmembrane helices and signal peptides: Phobius

Check the current SEED with FIGfam search

Find homologs in fast.genomics or the ENIGMA genome browser

Find the best match in UniProt

Protein Sequence (136 amino acids)

>GFF4642 no description (Variovorax sp. SCN45)
VSLPALTKQFSKFTVIGALNFVFTLVLFYLAVVVLQVNHLIALVIVALVGMCLTYTLNYF
WVFKPSERITFGARFAKYIAAGLVSVGLNVVLLHLLTSKTRIPPFYGQMLLIPVIVVFNF
LSAKLWSLRTEREAGR