Protein Info for GFF4633 in Salmonella enterica subsp. enterica serovar Typhimurium str. MS1868

Annotation: Putative transport protein

These analyses and tools can help you predict a protein's function, but be skeptical. For enzymes, over 10% of annotations from KEGG or SEED are probably incorrect. For other types of proteins, the error rates may be much higher. MetaCyc and Swiss-Prot have low error rates, but the best hits in these databases are often quite distant, so this protein's function may not be the same. TIGRFam has low error rates. Finally, many experimentally-characterized proteins are not in any of these databases. To find relevant papers, use PaperBLAST.

Protein Families and Features

1 50 100 150 200 250 300 348 transmembrane" amino acids 6 to 32 (27 residues), see Phobius details amino acids 52 to 73 (22 residues), see Phobius details amino acids 79 to 103 (25 residues), see Phobius details amino acids 144 to 162 (19 residues), see Phobius details amino acids 174 to 196 (23 residues), see Phobius details amino acids 206 to 223 (18 residues), see Phobius details amino acids 230 to 247 (18 residues), see Phobius details amino acids 259 to 283 (25 residues), see Phobius details amino acids 298 to 318 (21 residues), see Phobius details amino acids 323 to 343 (21 residues), see Phobius details TIGR03082: membrane protein AbrB duplication" amino acids 6 to 161 (156 residues), 143.3 bits, see alignment E=2.7e-46 amino acids 184 to 339 (156 residues), 146.2 bits, see alignment E=3.6e-47 PF05145: AbrB" amino acids 30 to 339 (310 residues), 321.5 bits, see alignment E=2.5e-100

Best Hits

Swiss-Prot: 81% identical to ABRB_ECOLI: Putative regulator AbrB (abrB) from Escherichia coli (strain K12)

KEGG orthology group: K07120, (no description) (inferred from 98% identity to spq:SPAB_02804)

Predicted SEED Role

"Putative transport protein"

Sequence Analysis Tools

PaperBLAST (search for papers about homologs of this protein)

Search CDD (the Conserved Domains Database, which includes COG and superfam)

Compare to protein structures

Predict protein localization: PSORTb (Gram-negative bacteria)

Predict transmembrane helices and signal peptides: Phobius

Check the current SEED with FIGfam search

Find homologs in fast.genomics or the ENIGMA genome browser

Find the best match in UniProt

Protein Sequence (348 amino acids)

>GFF4633 Putative transport protein (Salmonella enterica subsp. enterica serovar Typhimurium str. MS1868)
MPILQWFLLFLLSLLISLIFLYLHLPAAMLLGPMIAGIVLSLRGSTLQLPRGIFLAAQAI
LGCMIAQNLTGSILTTLALYWPVVLLVLLVTLLSSAVVGWLLVRYSSLPGNTGAWGSSPG
GAAAMVAMAQDYGADIRLVAFMQYLRVLFVAGAAVLVTRLILGDSAAAVSQQVIWFPPLS
GNVLTTLLLAIVAGIAGRLMRIPSGTMLLPMLAGALLHSQGIIEIELPEWLLAVAYMAIG
WRIGLGFDRQVFFMALRPLPQILLSIFALMAICAAMAWGMAYYMQIDFMTAYLATSPGGL
DTVAAIAAGSSADMALIMAMQTLRLFSILLTGPAVARFISTYAPKQPL