Protein Info for GFF4628 in Sphingobium sp. HT1-2

Annotation: hypothetical protein

These analyses and tools can help you predict a protein's function, but be skeptical. For enzymes, over 10% of annotations from KEGG or SEED are probably incorrect. For other types of proteins, the error rates may be much higher. MetaCyc and Swiss-Prot have low error rates, but the best hits in these databases are often quite distant, so this protein's function may not be the same. TIGRFam has low error rates. Finally, many experimentally-characterized proteins are not in any of these databases. To find relevant papers, use PaperBLAST.

Protein Families and Features

1 50 100 150 200 250 300 350 400 456 transmembrane" amino acids 17 to 38 (22 residues), see Phobius details amino acids 177 to 200 (24 residues), see Phobius details PF00512: HisKA" amino acids 252 to 305 (54 residues), 31.5 bits, see alignment 1.5e-11 PF02518: HATPase_c" amino acids 350 to 453 (104 residues), 74.6 bits, see alignment E=8.8e-25

Best Hits

KEGG orthology group: None (inferred from 72% identity to sjp:SJA_C2-03240)

Predicted SEED Role

No annotation

Sequence Analysis Tools

PaperBLAST (search for papers about homologs of this protein)

Search CDD (the Conserved Domains Database, which includes COG and superfam)

Compare to protein structures

Predict protein localization: PSORTb (Gram-negative bacteria)

Predict transmembrane helices and signal peptides: Phobius

Check the current SEED with FIGfam search

Find homologs in fast.genomics or the ENIGMA genome browser

Find the best match in UniProt

Protein Sequence (456 amino acids)

>GFF4628 hypothetical protein (Sphingobium sp. HT1-2)
MIGQPVQRGRDFFRSMAGHIFVLLTVGISLSAILALAVSEQGRRHDFERVRRQRVLASAF
DVADRLRRDPVRVQQMLENHGIVGASIAPDGISINEPDPDLEAALARRFGPRAQPEAGQV
PFGLCFPDKDAGRSRAAGLIDAPRPDCWIVRMTDATGQRRGMALTFPRLARPPSSLFSPA
YLVVILLSAAGLSILIGRIAAKPLRRLSQAAEAFSVSRDPEEIPERGPEEVRAALSTFNL
MQRRVRAGFTERTQLLAAISHDLQTPLTRLRLRLELVENEELRARLLQDHEAMQRLVREG
LDLAASTETHEEWSVIDLDSLLASMAEDAQELGAPVQFAAGCGASVRVKPNALTRCMSNL
VDNAVKYGGCAEISCLRTPGHVTIEIRDHGPGIPPQDLDQMFEPFTRGASSQPGGRHGTG
IGLTIARSLGLSFGAIVALRNAPDGGLIASIEMKAA