Protein Info for GFF4615 in Xanthobacter sp. DMC5

Annotation: hypothetical protein

These analyses and tools can help you predict a protein's function, but be skeptical. For enzymes, over 10% of annotations from KEGG or SEED are probably incorrect. For other types of proteins, the error rates may be much higher. MetaCyc and Swiss-Prot have low error rates, but the best hits in these databases are often quite distant, so this protein's function may not be the same. TIGRFam has low error rates. Finally, many experimentally-characterized proteins are not in any of these databases. To find relevant papers, use PaperBLAST.

Protein Families and Features

1 50 100 150 200 250 300 350 400 450 500 567 PF13432: TPR_16" amino acids 25 to 80 (56 residues), 35.2 bits, see alignment 6.2e-12 amino acids 64 to 112 (49 residues), 16.5 bits, see alignment 4.3e-06 PF13181: TPR_8" amino acids 47 to 79 (33 residues), 12.4 bits, see alignment (E = 6.9e-05) PF13414: TPR_11" amino acids 63 to 92 (30 residues), 29.1 bits, see alignment (E = 2.9e-10) PF13844: Glyco_transf_41" amino acids 186 to 343 (158 residues), 136.2 bits, see alignment E=5.1e-43 amino acids 358 to 541 (184 residues), 129.1 bits, see alignment E=7.6e-41

Best Hits

KEGG orthology group: None (inferred from 68% identity to xau:Xaut_0451)

Predicted SEED Role

"TPR domain protein, putative component of TonB system" in subsystem Ton and Tol transport systems

Sequence Analysis Tools

PaperBLAST (search for papers about homologs of this protein)

Search CDD (the Conserved Domains Database, which includes COG and superfam)

Compare to protein structures

Predict protein localization: PSORTb (Gram-negative bacteria)

Predict transmembrane helices and signal peptides: Phobius

Check the current SEED with FIGfam search

Find homologs in fast.genomics or the ENIGMA genome browser

Find the best match in UniProt

Protein Sequence (567 amino acids)

>GFF4615 hypothetical protein (Xanthobacter sp. DMC5)
MSQPPPPLPPALAKLLYDGYQHQLRGQYEDAARAYRKILKTAPDHADVIQLLGICRARQG
RELEAIELYRKALTRRPDDAKLHYNLALAYGALKREAEEVAAMGEAFARDPSLPLAANVL
FPARRGTCDWRGHDRLLENLRLGAIGQSAPSIPFLTLYLDDPAMHLAGARRWVEAEKQPA
RPLVFDHAPRRTSTGPIRVAYVSADFRIHPTTHLIAGLLERHDRSRFEITAVSIGPDDGS
PERARVKGAVDRFVDVEKASTEDIARQITGLGIDIAVDLMGHTQGERMALFAHRPAPVQV
GFLGYPGTSGASFFDYVIGDPVVLPFADALFYSEKIVQLPHCYQPNDPDLPVAEPPGRAA
CGLPEDAFVFVSFNAAWKLDPDTFSSFARILAAVPGSVLWLLEGRAGTDDNLRREAVRRG
LDPSRLVFAPRVPLKEHLARIGHADLFLDTFPYTAHTTASDALRRGVPIVTRTGRSFASR
VADSLMRQVGVGDLATTTPAAFEARAIALARDPAALAEVRARLQAGLPASPLFAVDLYAR
HIESAYETMAARMRAGVAPEAFAVAAL