Protein Info for PS417_23585 in Pseudomonas simiae WCS417

Annotation: chemotaxis protein

These analyses and tools can help you predict a protein's function, but be skeptical. For enzymes, over 10% of annotations from KEGG or SEED are probably incorrect. For other types of proteins, the error rates may be much higher. MetaCyc and Swiss-Prot have low error rates, but the best hits in these databases are often quite distant, so this protein's function may not be the same. TIGRFam has low error rates. Finally, many experimentally-characterized proteins are not in any of these databases. To find relevant papers, use PaperBLAST.

Protein Families and Features

1 50 100 150 200 250 300 350 400 450 500 550 600 639 transmembrane" amino acids 14 to 37 (24 residues), see Phobius details amino acids 288 to 308 (21 residues), see Phobius details PF12729: 4HB_MCP_1" amino acids 7 to 150 (144 residues), 27.2 bits, see alignment E=5.3e-10 PF16591: HBM" amino acids 33 to 286 (254 residues), 261.1 bits, see alignment E=2.1e-81 PF00672: HAMP" amino acids 307 to 359 (53 residues), 47.7 bits, see alignment 3.2e-16 PF00015: MCPsignal" amino acids 423 to 605 (183 residues), 150.7 bits, see alignment E=7.4e-48

Best Hits

KEGG orthology group: K03406, methyl-accepting chemotaxis protein (inferred from 96% identity to pfs:PFLU5176)

Predicted SEED Role

"Methyl-accepting chemotaxis protein I (serine chemoreceptor protein)" in subsystem Bacterial Chemotaxis

Sequence Analysis Tools

PaperBLAST (search for papers about homologs of this protein)

Search CDD (the Conserved Domains Database, which includes COG and superfam)

Compare to protein structures

Predict protein localization: PSORTb (Gram-negative bacteria)

Predict transmembrane helices and signal peptides: Phobius

Check the current SEED with FIGfam search

Find homologs in fast.genomics or the ENIGMA genome browser

See A0A1N7URI5 at UniProt or InterPro

Protein Sequence (639 amino acids)

>PS417_23585 chemotaxis protein (Pseudomonas simiae WCS417)
MNSWFGNISVNLKLGLGFGLVLVLTSILALTGWTSLGGLIDRSNWMSDITQLNASLTKLR
IVRLQYMLANGDEAVAQNVQTNLDAFAAQQQKLIDSFKSPENLKLLNEQKSIITAYQQSL
NKMREAYRNGNASRQVMGDKADIANAQINALETSVKQMPDSSEHLAQFQAVADAKMQFQL
ARYEVRGYTGNVSPETEARAAAQIEKAIAGLKDLNATFGASQQSALTALETALGAYRSAV
QNYKAANANIVTARAEMTTQGADIVTISDKLYEIQLTRRDAESAQARSLQLISTLLALLV
GVIAALVITRQITRPIQETLAVVERIASGDLSHNIQVTRRDELGVLQQGIQRMGTTLREL
ISGIRDGVTQIASAAEELSAVTEQTSAGVNSQKIETDQVATAMHEMTATVQEVARNAEQA
SLAAADADGQARAGDKVVAEAIAQIERLAAEVARSTDAMTHLQQESNKIGSVMDVIKAVA
EQTNLLALNAAIEAARAGEAGRGFAVVADEVRGLAQRTQKSTEEIEGLVAGLQNGTQQVA
NVMNNSRSLTDSSVELTRKAGVSLENITRTVSNIQSMNQQIAAAAEQQSAVAEEISRSIV
NVRDVSEQTATASDETAKSSVELARLGSQLQQMVSHFRV