Protein Info for GFF4604 in Xanthobacter sp. DMC5

Annotation: Putative aliphatic sulfonates transport permease protein SsuC

These analyses and tools can help you predict a protein's function, but be skeptical. For enzymes, over 10% of annotations from KEGG or SEED are probably incorrect. For other types of proteins, the error rates may be much higher. MetaCyc and Swiss-Prot have low error rates, but the best hits in these databases are often quite distant, so this protein's function may not be the same. TIGRFam has low error rates. Finally, many experimentally-characterized proteins are not in any of these databases. To find relevant papers, use PaperBLAST.

Protein Families and Features

1 50 100 150 200 253 signal peptide" amino acids 1 to 27 (27 residues), see Phobius details transmembrane" amino acids 63 to 87 (25 residues), see Phobius details amino acids 99 to 118 (20 residues), see Phobius details amino acids 124 to 143 (20 residues), see Phobius details amino acids 164 to 181 (18 residues), see Phobius details amino acids 187 to 208 (22 residues), see Phobius details amino acids 220 to 238 (19 residues), see Phobius details PF00528: BPD_transp_1" amino acids 76 to 240 (165 residues), 81.4 bits, see alignment E=3.7e-27

Best Hits

Swiss-Prot: 36% identical to Y3648_BRUA2: Probable ABC transporter permease protein BAB2_1148 (BAB2_1148) from Brucella abortus (strain 2308)

KEGG orthology group: K02050, sulfonate/nitrate/taurine transport system permease protein (inferred from 73% identity to mci:Mesci_2669)

MetaCyc: 30% identical to taurine ABC transporter membrane subunit (Escherichia coli K-12 substr. MG1655)
ABC-64-RXN [EC: 7.6.2.7]

Predicted SEED Role

"Urea carboxylase-related ABC transporter, permease protein" in subsystem Urea decomposition

Isozymes

No predicted isozymes

Use Curated BLAST to search for 7.6.2.7

Sequence Analysis Tools

PaperBLAST (search for papers about homologs of this protein)

Search CDD (the Conserved Domains Database, which includes COG and superfam)

Compare to protein structures

Predict protein localization: PSORTb (Gram-negative bacteria)

Predict transmembrane helices and signal peptides: Phobius

Check the current SEED with FIGfam search

Find homologs in fast.genomics or the ENIGMA genome browser

Find the best match in UniProt

Protein Sequence (253 amino acids)

>GFF4604 Putative aliphatic sulfonates transport permease protein SsuC (Xanthobacter sp. DMC5)
MSRTRFLGIACAVFAAIALAWLVAAAAGVVRPIFLPSPASVVAQLAKLAADGTLWTDMGV
SVYRILIGFLLASAMAIPLGLLVGSYLTWEAAVEPLVDFVRYMPVVAFVPLSILWVGTGD
AQKFLIIWIGTFFQQVLLVMDVVKRVPPDFIGLGRTLGLSDRKIITRIILPSAMPGIWDT
LRITLGWAWTWLVVAELVAATSGLGYRIVVAQRFFQTNTIFGYILLLGVLGLVTDQAMKA
AATHLFRYTTRGR