Protein Info for GFF4598 in Salmonella enterica subsp. enterica serovar Typhimurium str. MS1868

Annotation: Uncharacterized protein ybfE

These analyses and tools can help you predict a protein's function, but be skeptical. For enzymes, over 10% of annotations from KEGG or SEED are probably incorrect. For other types of proteins, the error rates may be much higher. MetaCyc and Swiss-Prot have low error rates, but the best hits in these databases are often quite distant, so this protein's function may not be the same. TIGRFam has low error rates. Finally, many experimentally-characterized proteins are not in any of these databases. To find relevant papers, use PaperBLAST.

Protein Families and Features

1 25 50 75 97 PF10723: RepB-RCR_reg" amino acids 17 to 84 (68 residues), 43.1 bits, see alignment E=3.6e-15 PF01402: RHH_1" amino acids 51 to 88 (38 residues), 37.4 bits, see alignment E=1.7e-13

Best Hits

Swiss-Prot: 91% identical to YBFE_SHIFL: Uncharacterized protein YbfE (ybfE) from Shigella flexneri

KEGG orthology group: None (inferred from 100% identity to ses:SARI_02247)

Predicted SEED Role

"Uncharacterized protein ybfE"

Sequence Analysis Tools

PaperBLAST (search for papers about homologs of this protein)

Search CDD (the Conserved Domains Database, which includes COG and superfam)

Compare to protein structures

Predict protein localization: PSORTb (Gram-negative bacteria)

Predict transmembrane helices and signal peptides: Phobius

Check the current SEED with FIGfam search

Find homologs in fast.genomics or the ENIGMA genome browser

Find the best match in UniProt

Protein Sequence (97 amino acids)

>GFF4598 Uncharacterized protein ybfE (Salmonella enterica subsp. enterica serovar Typhimurium str. MS1868)
MAKEQTDRTTLDLFAHERRPGRPKTNPLSRDEQLRINKRNQLKRDKVRGLKRVELKLNAQ
AVDALNELAEARNISRSELIEEILMKQLMALRGQGLV