Protein Info for PS417_23525 in Pseudomonas simiae WCS417

Annotation: glycoside hydrolase

These analyses and tools can help you predict a protein's function, but be skeptical. For enzymes, over 10% of annotations from KEGG or SEED are probably incorrect. For other types of proteins, the error rates may be much higher. MetaCyc and Swiss-Prot have low error rates, but the best hits in these databases are often quite distant, so this protein's function may not be the same. TIGRFam has low error rates. Finally, many experimentally-characterized proteins are not in any of these databases. To find relevant papers, use PaperBLAST.

Protein Families and Features

1 50 100 150 200 250 300 350 400 PF13439: Glyco_transf_4" amino acids 19 to 184 (166 residues), 99.9 bits, see alignment E=4.2e-32 PF13579: Glyco_trans_4_4" amino acids 20 to 173 (154 residues), 70.3 bits, see alignment E=6.2e-23 PF00534: Glycos_transf_1" amino acids 195 to 357 (163 residues), 104.9 bits, see alignment E=8.8e-34 PF20706: GT4-conflict" amino acids 201 to 366 (166 residues), 27.9 bits, see alignment E=3e-10 PF13692: Glyco_trans_1_4" amino acids 208 to 344 (137 residues), 107.1 bits, see alignment E=2.4e-34

Best Hits

KEGG orthology group: None (inferred from 97% identity to pfs:PFLU5164)

Predicted SEED Role

"Glycosyl transferase, group 1 family protein"

Sequence Analysis Tools

PaperBLAST (search for papers about homologs of this protein)

Search CDD (the Conserved Domains Database, which includes COG and superfam)

Compare to protein structures

Predict protein localization: PSORTb (Gram-negative bacteria)

Predict transmembrane helices and signal peptides: Phobius

Check the current SEED with FIGfam search

Find homologs in fast.genomics or the ENIGMA genome browser

See A0A1N7U6G0 at UniProt or InterPro

Protein Sequence (400 amino acids)

>PS417_23525 glycoside hydrolase (Pseudomonas simiae WCS417)
MTTASLHITLITETFPPEINGVANTLGRLCEGLRARGHQVELVRPRQGVDQSRPSDDALL
LCRGWPLPGYPGLQWGQSSMHKLLRRWTRQRPDVLYIATEGPLGLSALRAARRLGISVVS
GFHTNFQQYSNQYGLSLLSRMVTHYLRWFHNRSTLTLVPSASQRLELERRHFERLGMLSR
GVDSQLFHPAKRDNALRKSWALNSEQTAVLYVGRLAQEKNLGLLKRCFETLQDTYPLRQM
KLIIVGDGPQRATMEKELPEAIFCGTLRGEELARHYASGDVFLFPSLTETFGNVVLEAMA
SGLGVVAYDQAAATQHIRHGYNGVLAMPGDENAFCEAANWLLEDAESLRRMRLNARQHAS
RQGWPAIIEQFERQLRGVCKDGHPVPALSPLTPGSSTPHD