Protein Info for PS417_23485 in Pseudomonas simiae WCS417

Annotation: antibiotic biosynthesis monooxygenase

These analyses and tools can help you predict a protein's function, but be skeptical. For enzymes, over 10% of annotations from KEGG or SEED are probably incorrect. For other types of proteins, the error rates may be much higher. MetaCyc and Swiss-Prot have low error rates, but the best hits in these databases are often quite distant, so this protein's function may not be the same. TIGRFam has low error rates. Finally, many experimentally-characterized proteins are not in any of these databases. To find relevant papers, use PaperBLAST.

Protein Families and Features

1 50 100 150 185 transmembrane" amino acids 115 to 136 (22 residues), see Phobius details amino acids 145 to 169 (25 residues), see Phobius details PF03992: ABM" amino acids 5 to 76 (72 residues), 24.6 bits, see alignment E=1.1e-09

Best Hits

KEGG orthology group: K09932, hypothetical protein (inferred from 93% identity to pfs:PFLU5156)

Predicted SEED Role

"putative membrane protein"

Sequence Analysis Tools

PaperBLAST (search for papers about homologs of this protein)

Search CDD (the Conserved Domains Database, which includes COG and superfam)

Compare to protein structures

Predict protein localization: PSORTb (Gram-negative bacteria)

Predict transmembrane helices and signal peptides: Phobius

Check the current SEED with FIGfam search

Find homologs in fast.genomics or the ENIGMA genome browser

See A0A1N7URG5 at UniProt or InterPro

Protein Sequence (185 amino acids)

>PS417_23485 antibiotic biosynthesis monooxygenase (Pseudomonas simiae WCS417)
MSTSPVTLMVARRVAKGRYEELMAWLREGEQLATDFPGYLGSGVLAPPPNDDEFQIIFRF
ADEQTLHAWEFSASRSAWLSRGSELFADPSEHRVRGIDGWFGAVGARPPRWKQAVAIWLA
FFPVSLLFNFVLGPLLNGLDLAPRVLVSTMALTPLMVYWFIPLSTHLLANWLHPSPPRKV
AEAAA