Protein Info for PS417_23420 in Pseudomonas simiae WCS417

Annotation: LuxR family transcriptional regulator

These analyses and tools can help you predict a protein's function, but be skeptical. For enzymes, over 10% of annotations from KEGG or SEED are probably incorrect. For other types of proteins, the error rates may be much higher. MetaCyc and Swiss-Prot have low error rates, but the best hits in these databases are often quite distant, so this protein's function may not be the same. TIGRFam has low error rates. Finally, many experimentally-characterized proteins are not in any of these databases. To find relevant papers, use PaperBLAST.

Protein Families and Features

1 50 100 150 200 250 300 350 400 450 500 550 600 650 700 750 800 833 transmembrane" amino acids 366 to 385 (20 residues), see Phobius details PF17874: TPR_MalT" amino acids 428 to 734 (307 residues), 63.3 bits, see alignment E=2.6e-21 PF00196: GerE" amino acids 771 to 825 (55 residues), 64.9 bits, see alignment 4.2e-22

Best Hits

KEGG orthology group: None (inferred from 91% identity to pfs:PFLU5146)

Predicted SEED Role

No annotation

Sequence Analysis Tools

PaperBLAST (search for papers about homologs of this protein)

Search CDD (the Conserved Domains Database, which includes COG and superfam)

Compare to protein structures

Predict protein localization: PSORTb (Gram-negative bacteria)

Predict transmembrane helices and signal peptides: Phobius

Check the current SEED with FIGfam search

Find homologs in fast.genomics or the ENIGMA genome browser

See A0A1N7UBV1 at UniProt or InterPro

Protein Sequence (833 amino acids)

>PS417_23420 LuxR family transcriptional regulator (Pseudomonas simiae WCS417)
MTAMTRCLDRPGFMPRLSAHHLLRPRLAEPLLAAQVRVKLLCAPAGSGKSALFAECALQA
PKDCPVHWLPLNGIALSPLDLCQRLAQNLDLPFIDEATLLSDLARWQAPAWVFLDDFCRL
PAPDTDALLDRLFTASSPALTWWLGTRRRPLCNWPRLLLDDELLECGADLAFSPVEIQQL
LTHAPGQSVDQVLQFSAGWCAGARIALLGDGHPEKTLLDYLQHELFSTLPPELAEAWRVL
AHLPRFNAGLCEHLFGFGDGDQYLHDLQALGAFIQPWEDTEWLQVFPPLADLLRDEPWPA
KRSWHRRACQWFTAEQDWQAAFEHALLAEEYEVAVSLLQHFSFEDLFRQQNAMLLLRLHE
QHGDELMLGSAQLVGLLTAALLFAGRFEQAAQCIQQLARFAPQPTAAKQRYLLARWQAQW
GWLLHLGGDAERSREHFLEALHALPDSAWTSRLMCLSGLTQQALLRGELDVAQGLSREAL
CLARAHGSLLLEALLELDHAQLLEQRGAPYRAQSLLEKVQSMLLKQRLKAGPLVGRIALR
QGHLALRQGQDSLAAECFEAGLKMCLHSQDKRVLYGFLGLALLAANRGDYAQAFVQLRDA
ERLMQQRQVPDTVYRAVLLLVSGHFWLQQGRAELTVEAVRRVLRHFRGPQAKQAPPATLE
LVPRLEYLLVLAEVRLGGADQPVARLTALLETAHQRGMLCLETELRLVLGEVAWQVGDCA
LARRSLQTGLELAARCQVQQAIRELRLRSPGLLSELGMEPQAPVSGAVESPLSQRELEVL
QLIALGNSNLEIADRLFISLHTVKTHARRIHSKLGVERRTQAVAKAKTLGLMA