Protein Info for GFF4566 in Hydrogenophaga sp. GW460-11-11-14-LB1

Annotation: Phosphoribosylformylglycinamidine synthase, synthetase subunit (EC 6.3.5.3) / Phosphoribosylformylglycinamidine synthase, glutamine amidotransferase subunit (EC 6.3.5.3)

These analyses and tools can help you predict a protein's function, but be skeptical. For enzymes, over 10% of annotations from KEGG or SEED are probably incorrect. For other types of proteins, the error rates may be much higher. MetaCyc and Swiss-Prot have low error rates, but the best hits in these databases are often quite distant, so this protein's function may not be the same. TIGRFam has low error rates. Finally, many experimentally-characterized proteins are not in any of these databases. To find relevant papers, use PaperBLAST.

Protein Families and Features

1 100 200 300 400 500 600 700 800 900 1000 1100 1200 1336 TIGR01735: phosphoribosylformylglycinamidine synthase" amino acids 8 to 1335 (1328 residues), 1781.9 bits, see alignment E=0 PF18076: FGAR-AT_N" amino acids 39 to 165 (127 residues), 111.5 bits, see alignment E=4.6e-36 PF18072: FGAR-AT_linker" amino acids 186 to 235 (50 residues), 83.9 bits, see alignment (E = 1.8e-27) PF02769: AIRS_C" amino acids 442 to 598 (157 residues), 110.8 bits, see alignment E=1.5e-35 amino acids 843 to 996 (154 residues), 52.9 bits, see alignment E=1e-17 PF13507: GATase_5" amino acids 1084 to 1335 (252 residues), 331.5 bits, see alignment E=5.9e-103

Best Hits

KEGG orthology group: K01952, phosphoribosylformylglycinamidine synthase [EC: 6.3.5.3] (inferred from 85% identity to aaa:Acav_2184)

Predicted SEED Role

"Phosphoribosylformylglycinamidine synthase, synthetase subunit (EC 6.3.5.3) / Phosphoribosylformylglycinamidine synthase, glutamine amidotransferase subunit (EC 6.3.5.3)" in subsystem De Novo Purine Biosynthesis (EC 6.3.5.3)

MetaCyc Pathways

KEGG Metabolic Maps

Isozymes

No predicted isozymes

Use Curated BLAST to search for 6.3.5.3

Sequence Analysis Tools

PaperBLAST (search for papers about homologs of this protein)

Search CDD (the Conserved Domains Database, which includes COG and superfam)

Search structures

Predict protein localization: PSORTb (Gram-negative bacteria)

Predict transmembrane helices and signal peptides: Phobius

Check the current SEED with FIGfam search

Find homologs in fast.genomics or the ENIGMA genome browser

Find the best match in UniProt

Protein Sequence (1336 amino acids)

>GFF4566 Phosphoribosylformylglycinamidine synthase, synthetase subunit (EC 6.3.5.3) / Phosphoribosylformylglycinamidine synthase, glutamine amidotransferase subunit (EC 6.3.5.3) (Hydrogenophaga sp. GW460-11-11-14-LB1)
VSLHLRFFEGGNAVSDFKVQQILPRLAGISDKITGLSARFVHLASFDGEPDAATLQRVGE
LLTYGEPGTPAHAQLEAAGAPALLVMPRLGTVSPWASKATDIAHNCGLALHRVERLVEYR
VGLKSGLLGKKASLSEEQLRAVADLLHDRMTENVSLDRSQAQALFTELHPAPMEQVDVLG
GGRAALERANADWGLALADDEIDYLVNAFNGLKRNPTDVELMMFAQANSEHCRHKIFNAQ
FTIDGAAQDKSLFGMIRHTHQQAPQHTVVAYSDNASIMEGSVVERFVARAGGDTSPAYAA
ETATHHVLMKVETHNHPTAISPFPGASTGAGGEIRDEGATGRGSKPKAGLTGFTVGKLWG
GLSDQPGGKPEHIASPLQIMTEGPLGGAAFNNEFGRPNLLGYFREYELAVYGVQRGYHKP
IMIAGGVGVIDAIQTKKIEFPAGSLLIQLGGPGMKIGMGGSAASSMATGTNAASLDFDSV
QRGNPEIERRAQEVINHCWQQGENNPILAIHDVGAGGLSNAFPELTNDAGRGARFDLRAV
PLEESGLAPKEIWCNESQERYVLAIAPESLPLFQAFCERERCPFAVIGVATEERQLVLAD
EGQQSPVDMPMNVLLGKPPKMHRDVKSVARQATPLELTGVNLQQAVIDVLSHPTVASKRF
LITIGDRTVGGLSHRDQMVGPWQVPVADCAVTLADYKGFAGEAMSMGERTPLAALDAAAS
GRMAVAEAITNLLAAPIELPRVKLSANWMAACGEPGEDAALYDTVKAVGLELCPALGISI
PVGKDSLSMRTQWREGGETKKVTSPVSLIVSAFATLADVRGTLTPQLNNALEDTTLVLID
LGKGRHRMGGSVLAQVLGQGGGEVPDLDDAKDLVSLVNAVNALRAQGQILAYHDRSDGGL
LAAAAEMAFAGHVGVALNVDLLVTEGDGISDSRAEMGDAKNWAGQVSARREELTLKALFS
EELGVLLQVRTEDRNAVMQTLREHGLSKHSHFVGKTRPASSAMDAGKGQLQVWRDTKAVF
SASLFDLQQVWDSVSWKINQQRDNPAGADAEHAAAGQPDDPGLHTKLTFDAADNVATPFL
NLARPKVAILREQGVNSHVEMAYAFTQAGFEAFDVHMTDLQTGRAKLADFKGVVACGGFS
YGDTLGAGIGWARSITFNPGLSEQFQAFFGRSDTFGLGVCNGCQMFAELADIIPGAEAWP
RFTTNQSERFEARLSLVEVLDSPSLFLQGMAGSRLPIAVAHGEGYANFRHRGDAGKAIAA
MRFTDHSGAATEAYPFNPNGSPGGLTAVTTADGRFTAMMPHPERVFRNIQMSWTDQDPAA
FSAWMRLWRNARRWVG