Protein Info for GFF4562 in Hydrogenophaga sp. GW460-11-11-14-LB1

Annotation: Cobalt-zinc-cadmium resistance protein CzcA; Cation efflux system protein CusA

These analyses and tools can help you predict a protein's function, but be skeptical. For enzymes, over 10% of annotations from KEGG or SEED are probably incorrect. For other types of proteins, the error rates may be much higher. MetaCyc and Swiss-Prot have low error rates, but the best hits in these databases are often quite distant, so this protein's function may not be the same. TIGRFam has low error rates. Finally, many experimentally-characterized proteins are not in any of these databases. To find relevant papers, use PaperBLAST.

Protein Families and Features

1 100 200 300 400 500 600 700 800 900 1000 1051 transmembrane" amino acids 12 to 29 (18 residues), see Phobius details amino acids 333 to 351 (19 residues), see Phobius details amino acids 358 to 378 (21 residues), see Phobius details amino acids 384 to 408 (25 residues), see Phobius details amino acids 429 to 451 (23 residues), see Phobius details amino acids 463 to 488 (26 residues), see Phobius details amino acids 537 to 558 (22 residues), see Phobius details amino acids 863 to 886 (24 residues), see Phobius details amino acids 893 to 913 (21 residues), see Phobius details amino acids 919 to 944 (26 residues), see Phobius details amino acids 969 to 989 (21 residues), see Phobius details amino acids 1001 to 1026 (26 residues), see Phobius details PF00873: ACR_tran" amino acids 5 to 1024 (1020 residues), 771.6 bits, see alignment E=1.2e-235 PF03176: MMPL" amino acids 361 to 510 (150 residues), 20.6 bits, see alignment E=2e-08 amino acids 867 to 1030 (164 residues), 23.1 bits, see alignment E=3.5e-09

Best Hits

Predicted SEED Role

"Cobalt-zinc-cadmium resistance protein CzcA; Cation efflux system protein CusA"

Sequence Analysis Tools

PaperBLAST (search for papers about homologs of this protein)

Search CDD (the Conserved Domains Database, which includes COG and superfam)

Search structures

Predict protein localization: PSORTb (Gram-negative bacteria)

Predict transmembrane helices and signal peptides: Phobius

Check the current SEED with FIGfam search

Find homologs in fast.genomics or the ENIGMA genome browser

Find the best match in UniProt

Protein Sequence (1051 amino acids)

>GFF4562 Cobalt-zinc-cadmium resistance protein CzcA; Cation efflux system protein CusA (Hydrogenophaga sp. GW460-11-11-14-LB1)
MNVSAWSIKNPIPAAMLFVMLTLAGLFSFKQMKVQNFPDLDLPTITVVAALPGASPNQLE
NDVARIIENSLASLQGLKHIYTKVQDGTVSLTVEFRIEKNTQEALDDVRSAVAKVRSELP
TDLRDPIVNKVELAGGAVLAYTVSSDKMDAEALSWFVDNDVSKQLLSVTGVGAVSRVGGV
DREVQVLLDPLKLQSLGTTATDVSRQLARVQIESAGGRVDLGGSQQPLRTLSQLASAEAL
SKMEISLSDGRRIRLDQIAEVRDTVAEPTAAAFLDGKPVVGFEVARSRGASEIEVGDGVR
ARLKDLQTARPDLKITESFDFVTPVKEEFDASMTLLYEGALLAVLVVWLFLRDIRATIVS
AVALPLSAIPAFIGMYYMGFTINVVTLLALSLVIGILVDDAIVEVENIVRHMRMGKTPYQ
AAMEAADEIGLAVIATTFTLIAVFLPTAFMAGIPGKFFKQFGWTAALAVFASLVVARALT
PMMAAYILKPFVSREMPRWAASNPVTAAAWRWVNNQEEPGWLNTYQNWARWCIRHRWITS
LGAGLFFIGSLMLIPLLPQGFIPPDDNSQTQVFLELSPGATLEQTIATAERARLLVAAVP
HVRSVYTTIGSGTAGSDPFAPQGAAESRKAALTIQLDPRGERPRKQGIENQLREAMSNLP
GVRSKVGLGGSGEKYILTLTGSDAHALSTAARAIERDLRTIQGVGSIQSTAALVRTEIIV
TPDLARAAELGVTSSAIAETLRIATVGDYDNALPKMNLPERQIPIVVKLDVGARHDLEVL
NRLSVPGSKGPVMLGQVAQLDFGGGPAVIDRYDRARNINFEVELAGIALGDMKTAVEKLP
SLRNLPPGVSVLEIGDAEVQGELFASFGLAMLTGVLCIYIVLVLLFKAFLHPVTILAALP
LSLGGAFVALLLANKSFSMPSLIGLIMLMGVATKNSILLVEYAIEARREHGLNRLDAILD
ACHKRARPIVMTTIAMGAGMLPIAIGWGAADGSFRSPMAVAVIGGLITSTFLSLLVIPAV
FTIVDDVSLWFAGLFRRKSGDGAVEPGTLRA